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    LOC101759857 uncharacterized LOC101759857 [ Setaria italica (foxtail millet) ]

    Gene ID: 101759857, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC101759857
    Gene description
    uncharacterized LOC101759857
    Locus tag
    SETIT_024546mg
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Setaria italica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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    Genomic context

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    See LOC101759857 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current Setaria_italica_v2.0 (GCF_000263155.2) III NC_028452.1 (7629904..7631664)
    101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675963.1 (7629554..7630929)

    Chromosome III - NC_028452.1Genomic Context describing neighboring genes Neighboring gene NDR1/HIN1-like protein 6 Neighboring gene probable beta-1,3-galactosyltransferase 12 Neighboring gene thioredoxin-like 2, chloroplastic Neighboring gene uncharacterized LOC101762945

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC101759857

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Setaria_italica_v2.0 Primary Assembly

    Genomic

    1. NC_028452.1 Reference Setaria_italica_v2.0 Primary Assembly

      Range
      7629904..7631664
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022825203.1 → XP_022680938.1  uncharacterized protein LOC101759857

      UniProtKB/TrEMBL
      A0A368QEH9
      Conserved Domains (1) summary
      cd00083
      Location:165 → 217
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    Nucleotide Protein Strain
    Heading Accession and Version

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