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    ppm1aa protein phosphatase, Mg2+/Mn2+ dependent, 1Aa [ Seriola dumerili (greater amberjack) ]

    Gene ID: 111225333, updated on 15-Mar-2024

    Summary

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    Gene symbol
    ppm1aa
    Gene description
    protein phosphatase, Mg2+/Mn2+ dependent, 1Aa
    See related
    Ensembl:ENSSDUG00000019832
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Seriola dumerili
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
    Also known as
    ppm1a
    Orthologs
    human zebrafish all
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    Genomic context

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    See ppm1aa in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174404.1 (11818138..11832369, complement)

    NW_019174404.1Genomic Context describing neighboring genes Neighboring gene SIX homeobox 1a Neighboring gene SIX homeobox 6a Neighboring gene dehydrogenase/reductase (SDR family) member 7 Neighboring gene pecanex 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019174404 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables manganese ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of canonical Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein phosphatase 1A
    Names
    protein phosphatase, Mg2+/Mn2+ dependent 1A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sdu_1.0 Primary Assembly

    Genomic

    1. NW_019174404.1 Reference Sdu_1.0 Primary Assembly

      Range
      11818138..11832369 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022750127.1 → XP_022605848.1  protein phosphatase 1A

      UniProtKB/TrEMBL
      A0A3B4V9S8
      Related
      ENSSDUP00000027399.1, ENSSDUT00000027883.1
      Conserved Domains (2) summary
      cd00143
      Location:23 → 292
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
      pfam07830
      Location:286 → 362
      PP2C_C; Protein serine/threonine phosphatase 2C, C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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