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    mcrs1 microspherule protein 1 [ Seriola dumerili (greater amberjack) ]

    Gene ID: 111221646, updated on 15-Mar-2024

    Summary

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    Gene symbol
    mcrs1
    Gene description
    microspherule protein 1
    See related
    Ensembl:ENSSDUG00000004676
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Seriola dumerili
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
    Orthologs
    human zebrafish all
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    Genomic context

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    See mcrs1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174343.1 (13836679..13841827, complement)

    NW_019174343.1Genomic Context describing neighboring genes Neighboring gene matrix metallopeptidase 19 Neighboring gene sulfite oxidase Neighboring gene microspherule protein 1-like Neighboring gene 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019174343 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables G-quadruplex RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Ino80 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of MLL1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of NSL complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    microspherule protein 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sdu_1.0 Primary Assembly

    Genomic

    1. NW_019174343.1 Reference Sdu_1.0 Primary Assembly

      Range
      13836679..13841827 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022745113.1 → XP_022600834.1  microspherule protein 1-like isoform X1

      UniProtKB/TrEMBL
      A0A3B4TK41
      Related
      ENSSDUP00000006342.1, ENSSDUT00000006470.1
      Conserved Domains (2) summary
      cd00060
      Location:360 → 450
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      pfam13325
      Location:138 → 335
      MCRS_N; N-terminal region of micro-spherule protein

    2. XM_022745115.1 → XP_022600836.1  microspherule protein 1-like isoform X2

      Conserved Domains (2) summary
      cd00060
      Location:249 → 339
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      pfam13325
      Location:27 → 224
      MCRS_N; N-terminal region of micro-spherule protein
    Nucleotide Protein
    Heading Accession and Version

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