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    LOC111021145 TOM1-like protein 4 [ Momordica charantia (bitter melon) ]

    Gene ID: 111021145, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111021145
    Gene description
    TOM1-like protein 4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Momordica charantia
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
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    Genomic context

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    See LOC111021145 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current ASM199503v1 (GCF_001995035.1) Unplaced Scaffold NW_019104591.1 (491261..503106)

    NW_019104591.1Genomic Context describing neighboring genes Neighboring gene apyrase 2-like Neighboring gene apyrase 2-like Neighboring gene wall-associated receptor kinase 2-like Neighboring gene protein POLLEN DEFECTIVE IN GUIDANCE 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019104591 Unplaced Scaffold Reference ASM199503v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TOM1-like protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Momordica charantia Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM199503v1

    Genomic

    1. NW_019104591.1 Reference ASM199503v1

      Range
      491261..503106
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022297999.1 → XP_022153691.1  TOM1-like protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A6J1DI58
      Conserved Domains (2) summary
      cd03561
      Location:10 → 135
      VHS; VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ...
      cd14231
      Location:187 → 265
      GAT_GGA_like_plant; GAT domain found in uncharacterized Golgi-localized gamma ear-containing Arf-binding protein (GGA)-like proteins mainly found in plants

    2. XM_022297997.1 → XP_022153689.1  TOM1-like protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A6J1DI58
      Conserved Domains (2) summary
      cd03561
      Location:10 → 135
      VHS; VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ...
      cd14231
      Location:187 → 265
      GAT_GGA_like_plant; GAT domain found in uncharacterized Golgi-localized gamma ear-containing Arf-binding protein (GGA)-like proteins mainly found in plants

    3. XM_022298000.1 → XP_022153692.1  TOM1-like protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A6J1DI58
      Conserved Domains (2) summary
      cd03561
      Location:10 → 135
      VHS; VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ...
      cd14231
      Location:187 → 265
      GAT_GGA_like_plant; GAT domain found in uncharacterized Golgi-localized gamma ear-containing Arf-binding protein (GGA)-like proteins mainly found in plants

    4. XM_022297998.1 → XP_022153690.1  TOM1-like protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A6J1DI58
      Conserved Domains (2) summary
      cd03561
      Location:10 → 135
      VHS; VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ...
      cd14231
      Location:187 → 265
      GAT_GGA_like_plant; GAT domain found in uncharacterized Golgi-localized gamma ear-containing Arf-binding protein (GGA)-like proteins mainly found in plants

    5. XM_022298001.1 → XP_022153693.1  TOM1-like protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A6J1DI58
      Conserved Domains (2) summary
      cd03561
      Location:10 → 135
      VHS; VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ...
      cd14231
      Location:187 → 265
      GAT_GGA_like_plant; GAT domain found in uncharacterized Golgi-localized gamma ear-containing Arf-binding protein (GGA)-like proteins mainly found in plants

    6. XM_022297996.1 → XP_022153688.1  TOM1-like protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A6J1DI53
      Conserved Domains (2) summary
      cd03561
      Location:22 → 147
      VHS; VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ...
      cd14231
      Location:199 → 277
      GAT_GGA_like_plant; GAT domain found in uncharacterized Golgi-localized gamma ear-containing Arf-binding protein (GGA)-like proteins mainly found in plants
    Nucleotide Protein Strain
    Heading Accession and Version

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