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    LOC111020598 calcium-dependent protein kinase 2-like [ Momordica charantia (bitter melon) ]

    Gene ID: 111020598, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC111020598
    Gene description
    calcium-dependent protein kinase 2-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Momordica charantia
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See LOC111020598 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current ASM199503v1 (GCF_001995035.1) Unplaced Scaffold NW_019104583.1 (586980..589554, complement)

    NW_019104583.1Genomic Context describing neighboring genes Neighboring gene dihydropyrimidinase Neighboring gene lateral signaling target protein 2 homolog Neighboring gene splicing factor 3B subunit 6-like protein Neighboring gene rhodanese-like/PpiC domain-containing protein 12, chloroplastic Neighboring gene E3 ubiquitin-protein ligase KEG-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019104583 Unplaced Scaffold Reference ASM199503v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium-dependent protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium/calmodulin-dependent protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidyl-serine phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein autophosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium-dependent protein kinase 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Momordica charantia Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM199503v1

    Genomic

    1. NW_019104583.1 Reference ASM199503v1

      Range
      586980..589554 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022297302.1 → XP_022152994.1  calcium-dependent protein kinase 2-like

      UniProtKB/TrEMBL
      A0A6J1DHQ1
      Conserved Domains (3) summary
      cd05117
      Location:77 → 335
      STKc_CAMK; The catalytic domain of CAMK family Serine/Threonine Kinases
      cd15897
      Location:384 → 412
      EFh_PEF; EF-hand motif [structural motif]
      cl25352
      Location:376 → 515
      EFh_PEF; The penta-EF hand (PEF) family
    Nucleotide Protein Strain
    Heading Accession and Version

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