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    LOC111016463 mediator of RNA polymerase II transcription subunit 13 [ Momordica charantia (bitter melon) ]

    Gene ID: 111016463, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111016463
    Gene description
    mediator of RNA polymerase II transcription subunit 13
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Momordica charantia
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
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    Genomic context

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    See LOC111016463 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    100 current ASM199503v1 (GCF_001995035.1) Unplaced Scaffold NW_019104534.1 (214538..238029)

    NW_019104534.1Genomic Context describing neighboring genes Neighboring gene mitochondrial dicarboxylate/tricarboxylate transporter DTC Neighboring gene elongation factor P Neighboring gene uncharacterized LOC111016452 Neighboring gene calpain-type cysteine protease DEK1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019104534 Unplaced Scaffold Reference ASM199503v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mediator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mediator of RNA polymerase II transcription subunit 13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Momordica charantia Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM199503v1

    Genomic

    1. NW_019104534.1 Reference ASM199503v1

      Range
      214538..238029
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022291877.1 → XP_022147569.1  mediator of RNA polymerase II transcription subunit 13 isoform X2

      UniProtKB/TrEMBL
      A0A6J1D1E1
      Conserved Domains (1) summary
      pfam06333
      Location:1528 → 1587
      Med13_C; Mediator complex subunit 13 C-terminal

    2. XM_022291875.1 → XP_022147567.1  mediator of RNA polymerase II transcription subunit 13 isoform X1

      UniProtKB/TrEMBL
      A0A6J1D2Q1
      Conserved Domains (1) summary
      pfam06333
      Location:1542 → 1601
      Med13_C; Mediator complex subunit 13 C-terminal
    Nucleotide Protein Strain
    Heading Accession and Version

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