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    LOC111011567 dihydrodipicolinate reductase-like protein CRR1, chloroplastic [ Momordica charantia (bitter melon) ]

    Gene ID: 111011567, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111011567
    Gene description
    dihydrodipicolinate reductase-like protein CRR1, chloroplastic
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Momordica charantia
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
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    Genomic context

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    See LOC111011567 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current ASM199503v1 (GCF_001995035.1) Unplaced Scaffold NW_019104504.1 (1296867..1299543)

    NW_019104504.1Genomic Context describing neighboring genes Neighboring gene two-component response regulator ARR14-like Neighboring gene BAG family molecular chaperone regulator 3-like Neighboring gene protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic Neighboring gene probable transcriptional regulator SLK2 Neighboring gene DNA-directed RNA polymerases II, IV and V subunit 6A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019104504 Unplaced Scaffold Reference ASM199503v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 4-hydroxy-tetrahydrodipicolinate reductase IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lysine biosynthetic process via diaminopimelate IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dihydrodipicolinate reductase-like protein CRR1, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Momordica charantia Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM199503v1

    Genomic

    1. NW_019104504.1 Reference ASM199503v1

      Range
      1296867..1299543
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022285393.1 → XP_022141085.1  dihydrodipicolinate reductase-like protein CRR1, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A6J1CH02
      Conserved Domains (1) summary
      cl27064
      Location:37 → 292
      DapB_C; Dihydrodipicolinate reductase, C-terminus

    2. XM_022285394.1 → XP_022141086.1  dihydrodipicolinate reductase-like protein CRR1, chloroplastic isoform X2

      UniProtKB/TrEMBL
      A0A6J1CHZ0
      Conserved Domains (1) summary
      cl27064
      Location:37 → 302
      DapB_C; Dihydrodipicolinate reductase, C-terminus

    RNA

    1. XR_002601440.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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