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    LOC111006955 pentatricopeptide repeat-containing protein At4g21065-like [ Momordica charantia (bitter melon) ]

    Gene ID: 111006955, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111006955
    Gene description
    pentatricopeptide repeat-containing protein At4g21065-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Momordica charantia
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
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    Genomic context

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    See LOC111006955 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current ASM199503v1 (GCF_001995035.1) Unplaced Scaffold NW_019104494.1 (1725289..1729327)

    NW_019104494.1Genomic Context describing neighboring genes Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g74360 Neighboring gene uncharacterized LOC111006893 Neighboring gene transcription factor UNE10-like Neighboring gene DNA annealing helicase and endonuclease ZRANB3 Neighboring gene uncharacterized LOC111006915 Neighboring gene pentatricopeptide repeat-containing protein At5g50990

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019104494 Unplaced Scaffold Reference ASM199503v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At4g21065-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Momordica charantia Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM199503v1

    Genomic

    1. NW_019104494.1 Reference ASM199503v1

      Range
      1725289..1729327
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022279067.1 → XP_022134759.1  pentatricopeptide repeat-containing protein At4g21065-like

      UniProtKB/TrEMBL
      A0A6J1BZP4
      Conserved Domains (2) summary
      sd00004
      Location:349 → 376
      PPR; PPR repeat [structural motif]
      cl25449
      Location:149 → 653
      PPR_2; PPR repeat family
    Nucleotide Protein Strain
    Heading Accession and Version

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