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    LOC110614516 F-box protein GID2 [ Manihot esculenta (cassava) ]

    Gene ID: 110614516, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC110614516
    Gene description
    F-box protein GID2
    Locus tag
    MANES_05G178400v8
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Manihot esculenta
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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    Genomic context

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    See LOC110614516 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    101 current M.esculenta_v8 (GCF_001659605.2) 5 NC_035165.2 (29509983..29510884, complement)
    100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG5 NC_035165.1 (24519959..24520851, complement)

    Chromosome 5 - NC_035165.2Genomic Context describing neighboring genes Neighboring gene protein MRG2 Neighboring gene uncharacterized LOC110615432 Neighboring gene uncharacterized LOC110616235 Neighboring gene cytochrome P450 81Q32-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of gibberellic acid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SCF ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box protein GID2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference M.esculenta_v8 Primary Assembly

    Genomic

    1. NC_035165.2 Reference M.esculenta_v8 Primary Assembly

      Range
      29509983..29510884 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021756068.2 → XP_021611760.1  F-box protein GID2

      UniProtKB/TrEMBL
      A0A2C9VXD4
      Conserved Domains (1) summary
      pfam12937
      Location:53 → 90
      F-box-like; F-box-like
    Nucleotide Protein
    Heading Accession and Version

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