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    SGCA sarcoglycan alpha [ Carlito syrichta (Philippine tarsier) ]

    Gene ID: 103267667, updated on 11-Mar-2024

    Summary

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    Gene symbol
    SGCA
    Gene description
    sarcoglycan alpha
    See related
    Ensembl:ENSTSYG00000034165
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carlito syrichta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Tarsiiformes; Tarsiidae; Carlito
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    See SGCA in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current Tarsius_syrichta-2.0.1 (GCF_000164805.1) Unplaced Scaffold NW_007252291.1 (16273..27630)

    NW_007252291.1Genomic Context describing neighboring genes Neighboring gene collagen type I alpha 1 chain Neighboring gene 60S ribosomal protein L30-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_007252291 Unplaced Scaffold Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of sarcoglycan complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-sarcoglycan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carlito syrichta Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Genomic

    1. NW_007252291.1 Reference Tarsius_syrichta-2.0.1 Primary Assembly

      Range
      16273..27630
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021716141.1 → XP_021571816.1  alpha-sarcoglycan

      UniProtKB/TrEMBL
      A0A3Q0E8C7
      Related
      ENSTSYP00000016824.1, ENSTSYT00000037007.1
      Conserved Domains (1) summary
      pfam05510
      Location:71 → 405
      Sarcoglycan_2; Sarcoglycan alpha/epsilon
    Nucleotide Protein
    Heading Accession and Version

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