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    Rpn2 ribophorin II [ Mus caroli (Ryukyu mouse) ]

    Gene ID: 110290419, updated on 15-Mar-2024

    Summary

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    Gene symbol
    Rpn2
    Gene description
    ribophorin II
    See related
    Ensembl:MGP_CAROLIEiJ_G0024573
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus caroli
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Orthologs
    human mouse all
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    Genomic context

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    See Rpn2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) 2 NC_034571.1 (149242014..149289693)

    Chromosome 2 - NC_034571.1Genomic Context describing neighboring genes Neighboring gene RB transcriptional corepressor like 1 Neighboring gene U7 small nuclear RNA Neighboring gene maestro heat like repeat family member 8 Neighboring gene growth hormone releasing hormone Neighboring gene mannosidase beta like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_034571.1 Chromosome 2 Reference CAROLI_EIJ_v1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein N-linked glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of oligosaccharyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAROLI_EIJ_v1.1 Primary Assembly

    Genomic

    1. NC_034571.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

      Range
      149242014..149289693
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021156957.2 → XP_021012616.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 isoform X1

      UniProtKB/TrEMBL
      A0A6P5PBX5
      Related
      MGP_CAROLIEiJ_P0055765, MGP_CAROLIEiJ_T0055765.1
      Conserved Domains (1) summary
      pfam05817
      Location:9 → 623
      Ribophorin_II; Oligosaccharyltransferase subunit Ribophorin II

    2. XM_021156958.2 → XP_021012617.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 isoform X2

      UniProtKB/TrEMBL
      A0A6P5PE76
      Related
      MGP_CAROLIEiJ_P0055764, MGP_CAROLIEiJ_T0055764.1
      Conserved Domains (1) summary
      pfam05817
      Location:9 → 623
      Ribophorin_II; Oligosaccharyltransferase subunit Ribophorin II
    Nucleotide Protein
    Heading Accession and Version

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