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    BMF Bcl2 modifying factor [ Sus scrofa (pig) ]

    Gene ID: 110261428, updated on 17-Aug-2024

    Summary

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    Official Symbol
    BMFprovided by VGNC
    Official Full Name
    Bcl2 modifying factorprovided by VGNC
    Primary source
    VGNC:VGNC:85837
    See related
    Ensembl:ENSSSCG00000035284
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in lung (RPKM 18.3), ovary (RPKM 16.9) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See BMF in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (131178021..131199668)

    Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 63 Neighboring gene p21 (RAC1) activated kinase 6 Neighboring gene BUB1 mitotic checkpoint serine/threonine kinase B Neighboring gene uncharacterized LOC110261466 Neighboring gene eukaryotic translation initiation factor 2 alpha kinase 4 Neighboring gene signal recognition particle 14

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_010443.5 Chromosome 1 Reference Sscrofa11.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of autophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of myosin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bcl-2-modifying factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

      Range
      131178021..131199668
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021097837.1 → XP_020953496.1  bcl-2-modifying factor isoform X3

      UniProtKB/TrEMBL
      A0A287AIU8, A0A4X1UQ42, A0A8D0WCZ8, M3VH85
      Conserved Domains (1) summary
      pfam15185
      Location:13 → 183
      BMF; Bcl-2-modifying factor, apoptosis

    2. XM_021097833.1 → XP_020953492.1  bcl-2-modifying factor isoform X2

    3. XM_021097841.1 → XP_020953500.1  bcl-2-modifying factor isoform X3

      UniProtKB/TrEMBL
      A0A287AIU8, A0A4X1UQ42, A0A8D0WCZ8, M3VH85
      Conserved Domains (1) summary
      pfam15185
      Location:13 → 183
      BMF; Bcl-2-modifying factor, apoptosis

    4. XM_021097855.1 → XP_020953514.1  bcl-2-modifying factor isoform X5

      UniProtKB/TrEMBL
      A0A287BML0, A0A8D1EA66, M3VH85
      Conserved Domains (1) summary
      pfam15185
      Location:13 → 168
      BMF; Bcl-2-modifying factor, apoptosis

    5. XM_021097846.1 → XP_020953505.1  bcl-2-modifying factor isoform X3

      UniProtKB/TrEMBL
      A0A287AIU8, A0A4X1UQ42, A0A8D0WCZ8, M3VH85
      Related
      ENSSSCP00000045704.1, ENSSSCT00000063022.3
      Conserved Domains (1) summary
      pfam15185
      Location:13 → 183
      BMF; Bcl-2-modifying factor, apoptosis

    6. XM_021097854.1 → XP_020953513.1  bcl-2-modifying factor isoform X5

      UniProtKB/TrEMBL
      A0A287BML0, A0A8D1EA66, M3VH85
      Conserved Domains (1) summary
      pfam15185
      Location:13 → 168
      BMF; Bcl-2-modifying factor, apoptosis

    7. XM_021097831.1 → XP_020953490.1  bcl-2-modifying factor isoform X1

      UniProtKB/TrEMBL
      A0A8D1R5U3, M3VH85
      Conserved Domains (1) summary
      pfam15185
      Location:26 → 196
      BMF; Bcl-2-modifying factor, apoptosis

    8. XM_021097848.1 → XP_020953507.1  bcl-2-modifying factor isoform X3

      UniProtKB/TrEMBL
      A0A287AIU8, A0A4X1UQ42, A0A8D0WCZ8, M3VH85
      Conserved Domains (1) summary
      pfam15185
      Location:13 → 183
      BMF; Bcl-2-modifying factor, apoptosis

    9. XM_021097840.1 → XP_020953499.1  bcl-2-modifying factor isoform X3

      UniProtKB/TrEMBL
      A0A287AIU8, A0A4X1UQ42, A0A8D0WCZ8, M3VH85
      Conserved Domains (1) summary
      pfam15185
      Location:13 → 183
      BMF; Bcl-2-modifying factor, apoptosis

    10. XM_021097853.1 → XP_020953512.1  bcl-2-modifying factor isoform X5

      UniProtKB/TrEMBL
      A0A287BML0, A0A8D1EA66, M3VH85
      Related
      ENSSSCP00000057417.2, ENSSSCT00000047289.2
      Conserved Domains (1) summary
      pfam15185
      Location:13 → 168
      BMF; Bcl-2-modifying factor, apoptosis

    11. XM_021097847.1 → XP_020953506.1  bcl-2-modifying factor isoform X3

      UniProtKB/TrEMBL
      A0A287AIU8, A0A4X1UQ42, A0A8D0WCZ8, M3VH85
      Conserved Domains (1) summary
      pfam15185
      Location:13 → 183
      BMF; Bcl-2-modifying factor, apoptosis

    12. XM_021097857.1 → XP_020953516.1  bcl-2-modifying factor isoform X5

      UniProtKB/TrEMBL
      A0A287BML0, A0A8D1EA66, M3VH85
      Conserved Domains (1) summary
      pfam15185
      Location:13 → 168
      BMF; Bcl-2-modifying factor, apoptosis

    13. XM_021097851.1 → XP_020953510.1  bcl-2-modifying factor isoform X4

      UniProtKB/TrEMBL
      M3VH85
      Conserved Domains (1) summary
      pfam15185
      Location:26 → 181
      BMF; Bcl-2-modifying factor, apoptosis

    14. XM_021097829.1 → XP_020953488.1  bcl-2-modifying factor isoform X1

      UniProtKB/TrEMBL
      A0A8D1R5U3, M3VH85
      Conserved Domains (1) summary
      pfam15185
      Location:26 → 196
      BMF; Bcl-2-modifying factor, apoptosis

    15. XM_021097842.1 → XP_020953501.1  bcl-2-modifying factor isoform X3

      UniProtKB/TrEMBL
      A0A287AIU8, A0A4X1UQ42, A0A8D0WCZ8, M3VH85
      Conserved Domains (1) summary
      pfam15185
      Location:13 → 183
      BMF; Bcl-2-modifying factor, apoptosis

    16. XM_021097844.1 → XP_020953503.1  bcl-2-modifying factor isoform X3

      UniProtKB/TrEMBL
      A0A287AIU8, A0A4X1UQ42, A0A8D0WCZ8, M3VH85
      Conserved Domains (1) summary
      pfam15185
      Location:13 → 183
      BMF; Bcl-2-modifying factor, apoptosis
    Nucleotide Protein
    Heading Accession and Version

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