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    SGCA sarcoglycan alpha [ Pogona vitticeps (central bearded dragon) ]

    Gene ID: 110079195, updated on 15-Mar-2024

    Summary

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    Gene symbol
    SGCA
    Gene description
    sarcoglycan alpha
    See related
    Ensembl:ENSPVIG00000020214
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pogona vitticeps
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Acrodonta; Agamidae; Amphibolurinae; Pogona
    Orthologs
    human mouse all
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    Genomic context

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    See SGCA in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current pvi1.1 (GCF_900067755.1) Unplaced Scaffold NW_018150860.1 (800483..829159)

    NW_018150860.1Genomic Context describing neighboring genes Neighboring gene sterile alpha motif domain containing 14 Neighboring gene protein phosphatase 1 regulatory subunit 9B Neighboring gene spermatid-specific linker histone H1-like protein Neighboring gene uncharacterized LOC110079197 Neighboring gene collagen type I alpha 1 chain Neighboring gene all-trans-retinol 13,14-reductase-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_018150860.1 Unplaced Scaffold Reference pvi1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of sarcoglycan complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-sarcoglycan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pogona vitticeps Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference pvi1.1

    Genomic

    1. NW_018150860.1 Reference pvi1.1

      Range
      800483..829159
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020794074.1 → XP_020649733.1  alpha-sarcoglycan

      UniProtKB/TrEMBL
      A0A6J0TQE4
      Related
      ENSPVIP00000027188.1, ENSPVIT00000033433.1
      Conserved Domains (1) summary
      pfam05510
      Location:12 → 357
      Sarcoglycan_2; Sarcoglycan alpha/epsilon
    Nucleotide Protein
    Heading Accession and Version

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