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    LOC103639433 protein OBERON 4 [ Zea mays ]

    Gene ID: 103639433, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC103639433
    Gene description
    protein OBERON 4
    Locus tag
    ZEAMMB73_Zm00001d048074
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G024571
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    Genomic context

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    See LOC103639433 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 9 NC_050104.1 (152770274..152776828, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 9 NC_024467.2 (149393430..149398404, complement)

    Chromosome 9 - NC_050104.1Genomic Context describing neighboring genes Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene Heat shock 70 kDa protein 8 Neighboring gene uncharacterized LOC100277498 Neighboring gene uncharacterized LOC100278445

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
    2. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein OBERON 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050104.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      152770274..152776828 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008662175.3 → XP_008660397.2  protein OBERON 4

      UniProtKB/TrEMBL
      A0A1D6PGV0, A0A1D6PGV1
      Conserved Domains (2) summary
      pfam07227
      Location:990 → 1114
      PHD_Oberon; PHD - plant homeodomain finger protein
      pfam16312
      Location:1220 → 1330
      Oberon_cc; Coiled-coil region of Oberon

    RNA

    1. XR_004852833.1 RNA Sequence

    2. XR_004852836.1 RNA Sequence

    3. XR_004852834.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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