U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC100279481 uncharacterized LOC100279481 [ Zea mays ]

    Gene ID: 100279481, updated on 14-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC100279481
    Gene description
    uncharacterized LOC100279481
    Locus tag
    ZEAMMB73_Zm00001d022542
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    gpm517; GRMZM2G361847
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC100279481 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 7 NC_050102.1 (183196785..183202623, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 7 NC_024465.2 (179748248..179754083, complement)

    Chromosome 7 - NC_050102.1Genomic Context describing neighboring genes Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene trafficking protein particle complex protein 2 Neighboring gene transfer RNA alanine (anticodon CGC) Neighboring gene Rhodanese-like/PpiC domain-containing protein 12 chloroplastic

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Yilmaz A, et al. Plant Physiol, 2009 Jan. PMID 18987217, Free PMC Article
    2. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    3. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    4. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Transcription factor TGA2.1; uncharacterized protein LOC100279481
    Names
    Transcription factor TGA6
    bZIP-type transcription factor
    putative bZIP transcription factor superfamily protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001346930.1 → NP_001333859.1  Transcription factor TGA2.1

      Status: VALIDATED

      Source sequence(s)
      BT061586
      UniProtKB/TrEMBL
      A0A3L6E4R9, A0A804QG73, A0A8J8Y641, C0HGY0, K4JBS2
      Conserved Domains (3) summary
      cd14686
      Location:50 → 101
      bZIP; coiled coil [structural motif]
      pfam14144
      Location:131 → 205
      DOG1; Seed dormancy control
      cl21462
      Location:49 → 101
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050102.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      183196785..183202623 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020540456.2 → XP_020396045.1  uncharacterized protein LOC100279481 isoform X6

      UniProtKB/TrEMBL
      A0A1D6INY6, A0A1D6INY9
      Conserved Domains (3) summary
      cd14686
      Location:28 → 79
      bZIP; coiled coil [structural motif]
      pfam14144
      Location:109 → 184
      DOG1; Seed dormancy control
      cl21462
      Location:27 → 79
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    2. XM_008653096.2 → XP_008651318.1  uncharacterized protein LOC100279481 isoform X2

      See identical proteins and their annotated locations for XP_008651318.1

      UniProtKB/TrEMBL
      A0A3L6E4R9, A0A804QG73, A0A8J8Y641, C0HGY0, K4JBS2
      Conserved Domains (3) summary
      cd14686
      Location:50 → 101
      bZIP; coiled coil [structural motif]
      pfam14144
      Location:131 → 205
      DOG1; Seed dormancy control
      cl21462
      Location:49 → 101
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    3. XM_035960522.1 → XP_035816415.1  uncharacterized protein LOC100279481 isoform X1

      UniProtKB/TrEMBL
      A0A804QIK9
      Conserved Domains (2) summary
      cd14708
      Location:178 → 230
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
      pfam14144
      Location:260 → 335
      DOG1; Seed dormancy control

    4. XM_008653102.4 → XP_008651324.1  uncharacterized protein LOC100279481 isoform X5

      See identical proteins and their annotated locations for XP_008651324.1

      UniProtKB/TrEMBL
      A0A1D6INY8, A0A1D6INY9
      Conserved Domains (3) summary
      cd14686
      Location:41 → 92
      bZIP; coiled coil [structural motif]
      pfam14144
      Location:122 → 198
      DOG1; Seed dormancy control
      cl21462
      Location:40 → 92
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    5. XM_020540455.3 → XP_020396044.1  uncharacterized protein LOC100279481 isoform X2

      UniProtKB/TrEMBL
      A0A3L6E4R9, A0A804QG73, A0A8J8Y641, C0HGY0, K4JBS2
      Conserved Domains (3) summary
      cd14686
      Location:50 → 101
      bZIP; coiled coil [structural motif]
      pfam14144
      Location:131 → 205
      DOG1; Seed dormancy control
      cl21462
      Location:49 → 101
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    6. XM_035960524.1 → XP_035816417.1  uncharacterized protein LOC100279481 isoform X4

      UniProtKB/TrEMBL
      A0A1D6INY7, A0A1D6INY9
      Conserved Domains (3) summary
      cd14686
      Location:43 → 94
      bZIP; coiled coil [structural motif]
      pfam14144
      Location:124 → 199
      DOG1; Seed dormancy control
      cl21462
      Location:42 → 94
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    7. XM_008653098.3 → XP_008651320.1  uncharacterized protein LOC100279481 isoform X2

      See identical proteins and their annotated locations for XP_008651320.1

      UniProtKB/TrEMBL
      A0A3L6E4R9, A0A804QG73, A0A8J8Y641, C0HGY0, K4JBS2
      Conserved Domains (3) summary
      cd14686
      Location:50 → 101
      bZIP; coiled coil [structural motif]
      pfam14144
      Location:131 → 205
      DOG1; Seed dormancy control
      cl21462
      Location:49 → 101
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    8. XM_035960525.1 → XP_035816418.1  uncharacterized protein LOC100279481 isoform X6

      UniProtKB/TrEMBL
      A0A1D6INY6, A0A1D6INY9
      Conserved Domains (3) summary
      cd14686
      Location:28 → 79
      bZIP; coiled coil [structural motif]
      pfam14144
      Location:109 → 184
      DOG1; Seed dormancy control
      cl21462
      Location:27 → 79
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    9. XM_008653099.4 → XP_008651321.1  uncharacterized protein LOC100279481 isoform X4

      See identical proteins and their annotated locations for XP_008651321.1

      UniProtKB/TrEMBL
      A0A1D6INY7, A0A1D6INY9
      Conserved Domains (3) summary
      cd14686
      Location:43 → 94
      bZIP; coiled coil [structural motif]
      pfam14144
      Location:124 → 199
      DOG1; Seed dormancy control
      cl21462
      Location:42 → 94
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    10. XM_020540457.3 → XP_020396046.1  uncharacterized protein LOC100279481 isoform X4

      UniProtKB/TrEMBL
      A0A1D6INY7, A0A1D6INY9
      Conserved Domains (3) summary
      cd14686
      Location:43 → 94
      bZIP; coiled coil [structural motif]
      pfam14144
      Location:124 → 199
      DOG1; Seed dormancy control
      cl21462
      Location:42 → 94
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    11. XM_020540454.3 → XP_020396043.1  uncharacterized protein LOC100279481 isoform X2

      UniProtKB/TrEMBL
      A0A3L6E4R9, A0A804QG73, A0A8J8Y641, C0HGY0, K4JBS2
      Conserved Domains (3) summary
      cd14686
      Location:50 → 101
      bZIP; coiled coil [structural motif]
      pfam14144
      Location:131 → 205
      DOG1; Seed dormancy control
      cl21462
      Location:49 → 101
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    12. XM_035960523.1 → XP_035816416.1  uncharacterized protein LOC100279481 isoform X2

      UniProtKB/TrEMBL
      A0A3L6E4R9, A0A804QG73, A0A8J8Y641, C0HGY0, K4JBS2
      Conserved Domains (3) summary
      cd14686
      Location:50 → 101
      bZIP; coiled coil [structural motif]
      pfam14144
      Location:131 → 205
      DOG1; Seed dormancy control
      cl21462
      Location:49 → 101
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    13. XM_035960526.1 → XP_035816419.1  uncharacterized protein LOC100279481 isoform X6

      UniProtKB/TrEMBL
      A0A1D6INY6, A0A1D6INY9
      Conserved Domains (3) summary
      cd14686
      Location:28 → 79
      bZIP; coiled coil [structural motif]
      pfam14144
      Location:109 → 184
      DOG1; Seed dormancy control
      cl21462
      Location:27 → 79
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    14. XM_008653101.4 → XP_008651323.1  uncharacterized protein LOC100279481 isoform X3

      UniProtKB/TrEMBL
      A0A1D6INY9
      Conserved Domains (3) summary
      cd14686
      Location:43 → 94
      bZIP; coiled coil [structural motif]
      pfam14144
      Location:124 → 200
      DOG1; Seed dormancy control
      cl21462
      Location:42 → 94
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    RNA

    1. XR_002263314.3 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001152483.1: Suppressed sequence

      Description
      NM_001152483.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.

    2. NM_001196325.1: Suppressed sequence

      Description
      NM_001196325.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.