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    LOC103629231 type I inositol polyphosphate 5-phosphatase 8 [ Zea mays ]

    Gene ID: 103629231, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC103629231
    Gene description
    type I inositol polyphosphate 5-phosphatase 8
    Locus tag
    ZEAMMB73_Zm00001d035612
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G174031
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    Genomic context

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    See LOC103629231 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 6 NC_050101.1 (43050284..43052811)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 6 NC_024464.2 (36734454..36736908)

    Chromosome 6 - NC_050101.1Genomic Context describing neighboring genes Neighboring gene ZFP16-1 Neighboring gene protein transport protein Sec61 beta subunit Neighboring gene uncharacterized LOC103629232 Neighboring gene Type I inositol polyphosphate 5-phosphatase 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables inositol-polyphosphate 5-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylinositol dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    type I inositol polyphosphate 5-phosphatase 8
    Names
    putative inositol polyphosphate phosphatase (synaptogenin-like) family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050101.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      43050284..43052811
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020540194.2 → XP_020395783.1  type I inositol polyphosphate 5-phosphatase 8 isoform X1

      UniProtKB/TrEMBL
      A0A804PRH9
      Conserved Domains (1) summary
      cl00490
      Location:61 → 456
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    2. XM_008650408.3 → XP_008648630.1  type I inositol polyphosphate 5-phosphatase 8 isoform X2

      See identical proteins and their annotated locations for XP_008648630.1

      UniProtKB/TrEMBL
      A0A1D6LHK1
      Conserved Domains (1) summary
      cl00490
      Location:61 → 500
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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