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    LOC103627889 protein PHOSPHATE STARVATION RESPONSE 1 [ Zea mays ]

    Gene ID: 103627889, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC103627889
    Gene description
    protein PHOSPHATE STARVATION RESPONSE 1
    Locus tag
    ZEAMMB73_Zm00001d018465
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G379167; GRMZM5G811428
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    Genomic context

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    See LOC103627889 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 5 NC_050100.1 (223864244..223868264, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 5 NC_024463.2 (221329214..221335321, complement)

    Chromosome 5 - NC_050100.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109939601 Neighboring gene uncharacterized LOC100276225 Neighboring gene 60S ribosomal protein L23 Neighboring gene small nucleolar RNA snoR137 Neighboring gene uncharacterized LOC100217196

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of maize long non-coding RNAs responsive to drought stress. Zhang W, et al. PLoS One, 2014. PMID 24892290, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein PHOSPHATE STARVATION RESPONSE 1
    Names
    putative MYB DNA-binding domain superfamily protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050100.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      223864244..223868264 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020538741.3 → XP_020394330.1  protein PHOSPHATE STARVATION RESPONSE 1

      UniProtKB/TrEMBL
      A0A1D6HP80
      Conserved Domains (2) summary
      TIGR01557
      Location:245 → 301
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:341 → 376
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    2. XM_008648194.4 → XP_008646416.1  protein PHOSPHATE STARVATION RESPONSE 1

      UniProtKB/TrEMBL
      A0A1D6HP80
      Conserved Domains (2) summary
      TIGR01557
      Location:245 → 301
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:341 → 376
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
    Nucleotide Protein
    Heading Accession and Version

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