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    lcp2a lymphocyte cytosolic protein 2a [ Oncorhynchus kisutch (coho salmon) ]

    Gene ID: 109873056, updated on 11-Apr-2024

    Summary

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    Gene symbol
    lcp2a
    Gene description
    lymphocyte cytosolic protein 2a
    See related
    Ensembl:ENSOKIG00005037572
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus kisutch
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
    Orthologs
    zebrafish all
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    Genomic context

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    See lcp2a in Genome Data Viewer
    Location:
    chromosome: LG28
    Exon count:
    22
    Annotation release Status Assembly LG Location
    101 current Okis_V2 (GCF_002021735.2) LG28 NC_034201.2 (43078711..43095285, complement)
    100 previous assembly Okis_V1 (GCF_002021735.1) LG28 NC_034201.1 (9873095..9891014)

    Linkage Group LG28 - NC_034201.2Genomic Context describing neighboring genes Neighboring gene NHP2 ribonucleoprotein homolog (yeast) Neighboring gene forkhead box I3a Neighboring gene putative ammonium transporter 1 Neighboring gene zinc finger, matrin-type 2 Neighboring gene protein FAM53C-like Neighboring gene stem-loop binding protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lymphocyte cytosolic protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Okis_V2 Primary Assembly

    Genomic

    1. NC_034201.2 Reference Okis_V2 Primary Assembly

      Range
      43078711..43095285 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020464570.2 → XP_020320159.1  lymphocyte cytosolic protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C7JQR3, A0A8C7JQU7
      Related
      ENSOKIP00005086252.1, ENSOKIT00005092227.1
      Conserved Domains (3) summary
      cd09522
      Location:10 → 78
      SAM_SLP76; SAM domain of SLP76 subfamily
      PHA03307
      Location:149 → 413
      PHA03307; transcriptional regulator ICP4; Provisional
      cl15255
      Location:413 → 533
      SH2; Src homology 2 (SH2) domain

    2. XM_020464572.2 → XP_020320161.1  lymphocyte cytosolic protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A8C7JQU7
      Conserved Domains (3) summary
      cd09522
      Location:10 → 78
      SAM_SLP76; SAM domain of SLP76 subfamily
      PHA03307
      Location:149 → 413
      PHA03307; transcriptional regulator ICP4; Provisional
      cl15255
      Location:413 → 533
      SH2; Src homology 2 (SH2) domain
    Nucleotide Protein
    Heading Accession and Version

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