U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    ube3b ubiquitin protein ligase E3B [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 780337, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ube3bprovided by Xenbase
    Official Full Name
    ubiquitin protein ligase E3Bprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-1010563
    See related
    Ensembl:ENSXETG00000018590
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ube3b in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (146770038..146793017)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (138289723..138312569)

    Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene forkhead box N4 Neighboring gene myosin IH Neighboring gene potassium channel tetramerization domain containing 10 Neighboring gene uncharacterized LOC105948292 Neighboring gene aldehyde dehydrogenase 3 family member B1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC147533

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ubiquitin protein ligase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein polyubiquitination IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in ubiquitin-dependent protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    ubiquitin-protein ligase E3B
    Names
    HECT-type ubiquitin transferase E3B
    NP_001072875.1
    XP_012821644.1
    XP_031758247.1
    XP_031758255.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001079407.1 → NP_001072875.1  ubiquitin-protein ligase E3B

      See identical proteins and their annotated locations for NP_001072875.1

      Status: PROVISIONAL

      Source sequence(s)
      BC124027
      UniProtKB/Swiss-Prot
      Q08CZ0
      UniProtKB/TrEMBL
      A0A6I8SCR5, A0A8J1JK47
      Related
      ENSXETP00000040243.3, ENSXETT00000040243.4
      Conserved Domains (2) summary
      smart00015
      Location:28 → 50
      IQ; Calmodulin-binding motif
      cd00078
      Location:686 → 1070
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      146770038..146793017
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031902395.1 → XP_031758255.1  ubiquitin-protein ligase E3B isoform X1

      UniProtKB/Swiss-Prot
      Q08CZ0
      UniProtKB/TrEMBL
      A0A6I8SCR5, A0A8J1JK47
      Conserved Domains (2) summary
      smart00015
      Location:28 → 50
      IQ; Calmodulin-binding motif
      cd00078
      Location:686 → 1070
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    2. XM_012966190.3 → XP_012821644.1  ubiquitin-protein ligase E3B isoform X1

      See identical proteins and their annotated locations for XP_012821644.1

      UniProtKB/Swiss-Prot
      Q08CZ0
      UniProtKB/TrEMBL
      A0A6I8SCR5, A0A8J1JK47
      Conserved Domains (2) summary
      smart00015
      Location:28 → 50
      IQ; Calmodulin-binding motif
      cd00078
      Location:686 → 1070
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    3. XM_031902387.1 → XP_031758247.1  ubiquitin-protein ligase E3B isoform X1

      UniProtKB/Swiss-Prot
      Q08CZ0
      UniProtKB/TrEMBL
      A0A6I8SCR5, A0A8J1JK47
      Conserved Domains (2) summary
      smart00015
      Location:28 → 50
      IQ; Calmodulin-binding motif
      cd00078
      Location:686 → 1070
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q08CZ0.1 GenPept UniProtKB/Swiss-Prot:Q08CZ0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.