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    LOC109774597 protein indeterminate-domain 5, chloroplastic [ Aegilops tauschii ]

    Gene ID: 109774597, updated on 11-Jan-2024

    Summary

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    Gene symbol
    LOC109774597
    Gene description
    protein indeterminate-domain 5, chloroplastic
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Aegilops tauschii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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    Genomic context

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    See LOC109774597 in Genome Data Viewer
    Location:
    chromosome: 5D
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current Aet v5.0 (GCF_002575655.2) 5D NC_053039.2 (449280664..449288241)
    101 previous assembly Aet v4.0 (GCF_002575655.1) 5D NC_053039.1 (450316178..450323737)

    Chromosome 5D - NC_053039.2Genomic Context describing neighboring genes Neighboring gene peroxidase 2 Neighboring gene actin-related protein 4 Neighboring gene anaphase-promoting complex subunit 10-like Neighboring gene uncharacterized LOC109774607

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein indeterminate-domain 5, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Aet v5.0 Primary Assembly

    Genomic

    1. NC_053039.2 Reference Aet v5.0 Primary Assembly

      Range
      449280664..449288241
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020333339.3 → XP_020188928.1  protein indeterminate-domain 5, chloroplastic

      UniProtKB/TrEMBL
      A0A453LL54, A0A453LL62
      Conserved Domains (2) summary
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:66 → 88
      zf-C2H2; Zinc finger, C2H2 type

    2. XM_020333338.3 → XP_020188927.1  protein indeterminate-domain 5, chloroplastic

      UniProtKB/TrEMBL
      A0A453LL54, A0A453LL62
      Conserved Domains (2) summary
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:66 → 88
      zf-C2H2; Zinc finger, C2H2 type

    3. XM_020333340.3 → XP_020188929.1  protein indeterminate-domain 5, chloroplastic

      UniProtKB/TrEMBL
      A0A453LL54, A0A453LL62
      Conserved Domains (2) summary
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:66 → 88
      zf-C2H2; Zinc finger, C2H2 type

    4. XM_020333342.3 → XP_020188931.1  protein indeterminate-domain 5, chloroplastic

      UniProtKB/TrEMBL
      A0A453LL54, A0A453LL62
      Conserved Domains (2) summary
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:66 → 88
      zf-C2H2; Zinc finger, C2H2 type
    Nucleotide Protein
    Heading Accession and Version

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