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    LOC109764130 squamosa promoter-binding-like protein 18 [ Aegilops tauschii ]

    Gene ID: 109764130, updated on 18-Nov-2024

    Summary

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    Gene symbol
    LOC109764130
    Gene description
    squamosa promoter-binding-like protein 18
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Aegilops tauschii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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    Genomic context

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    See LOC109764130 in Genome Data Viewer
    Location:
    chromosome: 5D
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current Aet v5.0 (GCF_002575655.2) 5D NC_053039.2 (397667568..397673641)
    101 previous assembly Aet v4.0 (GCF_002575655.1) 5D NC_053039.1 (398585486..398591565)

    Chromosome 5D - NC_053039.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109764131 Neighboring gene uncharacterized LOC123494062 Neighboring gene uncharacterized LOC120964018 Neighboring gene MADS-box transcription factor 8-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    squamosa promoter-binding-like protein 18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Aet v5.0 Primary Assembly

    Genomic

    1. NC_053039.2 Reference Aet v5.0 Primary Assembly

      Range
      397667568..397673641
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020322974.3 → XP_020178563.1  squamosa promoter-binding-like protein 18

      UniProtKB/TrEMBL
      A0A453L898
      Conserved Domains (1) summary
      pfam03110
      Location:120 → 194
      SBP; SBP domain
    Nucleotide Protein
    Heading Accession and Version

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