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    LOC110785737 ATP synthase delta chain, chloroplastic [ Spinacia oleracea (spinach) ]

    Gene ID: 110785737, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC110785737
    Gene description
    ATP synthase delta chain, chloroplastic
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Spinacia oleracea
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
    Also known as
    ATPD
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    Genomic context

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    See LOC110785737 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_06 current BTI_SOV_V1 (GCF_020520425.1) 1 NC_079487.1 (135912548..135914230)
    100 previous assembly ASM200726v1 (GCF_002007265.1) Unplaced Scaffold NW_018931473.1 (481361..482984)

    Chromosome 1 - NC_079487.1Genomic Context describing neighboring genes Neighboring gene auxin-responsive protein SAUR40-like Neighboring gene protein MICRORCHIDIA 7-like Neighboring gene pentatricopeptide repeat-containing protein At4g18520, chloroplastic-like Neighboring gene olee1-like protein Neighboring gene glutaredoxin-C5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables proton-transporting ATP synthase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in photosynthetic electron transport in photosystem I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in photosynthetic electron transport in photosystem II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proton motive force-driven ATP synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast thylakoid membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proton-transporting ATP synthase complex, catalytic core F(1) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP synthase delta chain, chloroplastic
    Names
    F-ATPase delta chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_020520425.1-RS_2023_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BTI_SOV_V1 Primary Assembly

    Genomic

    1. NC_079487.1 Reference BTI_SOV_V1 Primary Assembly

      Range
      135912548..135914230
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021990240.2 → XP_021845932.2  ATP synthase delta chain, chloroplastic

      UniProtKB/Swiss-Prot
      P11402
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P11402.2 GenPept UniProtKB/Swiss-Prot:P11402

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