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    SAP25 Sin3A associated protein 25 [ Homo sapiens (human) ]

    Gene ID: 100316904, updated on 27-Aug-2024

    Summary

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    Official Symbol
    SAP25provided by HGNC
    Official Full Name
    Sin3A associated protein 25provided by HGNC
    Primary source
    HGNC:HGNC:41908
    See related
    Ensembl:ENSG00000205307 MIM:619230; AllianceGenome:HGNC:41908
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in spleen (RPKM 17.5), lymph node (RPKM 8.4) and 20 other tissues See more
    Orthologs
    mouse all
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    Genomic context

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    Location:
    7q22.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (100572228..100573900, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (101812311..101813983, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (100169851..100171523, complement)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901708 Neighboring gene ArfGAP with FG repeats 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26371 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26372 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26373 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:100166771-100167442 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18444 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:100168785-100169455 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:100172387-100172941 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:100172942-100173495 Neighboring gene insulin receptor substrate 3, pseudogene Neighboring gene leucine rich repeats and calponin homology domain containing 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:100181227-100181915 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:100182061-100182574 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:100182575-100183088 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18445 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18446 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18447 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:100187581-100188381 Neighboring gene PCOLCE antisense RNA 1 Neighboring gene F-box protein 24

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of SAP25, a novel component of the mSin3 corepressor complex. Shiio Y, et al. Mol Cell Biol, 2006 Feb. PMID 16449650, Free PMC Article
    2. Expressed sequence tag analysis of human retina for the NEIBank Project: retbindin, an abundant, novel retinal cDNA and alternative splicing of other retina-preferred gene transcripts. Wistow G, et al. Mol Vis, 2002 Jun 15. PMID 12107411
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    histone deacetylase complex subunit SAP25
    Names
    25 kDa Sin3-associated polypeptide
    Sin3 corepressor complex subunit SAP25
    Sin3A-associated protein, 25kDa
    sin3-associated polypeptide, 25kDa
    sin3A-binding protein 25

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001168682.3 → NP_001162153.2  histone deacetylase complex subunit SAP25 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice junction compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
      Source sequence(s)
      AC069281, BQ635892, BX117305, CR976678
      Conserved Domains (1) summary
      pfam15476
      Location:92 → 290
      SAP25; Histone deacetylase complex subunit SAP25

    2. NM_001348677.2 → NP_001335606.1  histone deacetylase complex subunit SAP25 isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) retains an intron in the 5' end compared to variant 1. The resulting isoform (3)is shorter at the N-terminus compared to isoform 1.
      Source sequence(s)
      AC069281
      Consensus CDS
      CCDS55137.1
      UniProtKB/Swiss-Prot
      Q8TEE9
      Related
      ENSP00000481351.1, ENST00000614631.4
      Conserved Domains (1) summary
      pfam15476
      Location:1 → 199
      SAP25; Histone deacetylase complex subunit SAP25

    3. NM_001348680.2 → NP_001335609.1  histone deacetylase complex subunit SAP25 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AC069281
      Consensus CDS
      CCDS87529.1
      UniProtKB/TrEMBL
      A0A087WYF9
      Related
      ENSP00000481773.2, ENST00000622764.3
      Conserved Domains (1) summary
      pfam15476
      Location:99 → 297
      SAP25; Histone deacetylase complex subunit SAP25

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      100572228..100573900 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      101812311..101813983 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001348670.1: Suppressed sequence

      Description
      NM_001348670.1: This RefSeq was removed because of a processing error.

    2. NM_001348671.1: Suppressed sequence

      Description
      NM_001348671.1: This RefSeq was removed because of a processing error.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8TEE9.2 GenPept UniProtKB/Swiss-Prot:Q8TEE9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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