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    LOC103650877 U-box domain-containing protein 45 [ Zea mays ]

    Gene ID: 103650877, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC103650877
    Gene description
    U-box domain-containing protein 45
    Locus tag
    ZEAMMB73_Zm00001d042480
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G115000
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    Genomic context

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    See LOC103650877 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 3 NC_050098.1 (171101705..171106423)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 3 NC_024461.2 (169054610..169059274)

    Chromosome 3 - NC_050098.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100272546 Neighboring gene putative recA DNA recombination family protein Neighboring gene uncharacterized LOC100275661 Neighboring gene uncharacterized LOC100284495

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U-box domain-containing protein 45
    Names
    U-box domain-containing protein 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050098.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      171101705..171106423
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008676468.3 → XP_008674690.1  U-box domain-containing protein 45

      See identical proteins and their annotated locations for XP_008674690.1

      UniProtKB/TrEMBL
      A0A096RVD6, A0A3L6FNI0
      Conserved Domains (1) summary
      smart00504
      Location:297 → 360
      Ubox; Modified RING finger domain

    2. XM_008676469.3 → XP_008674691.1  U-box domain-containing protein 45

      See identical proteins and their annotated locations for XP_008674691.1

      UniProtKB/TrEMBL
      A0A096RVD6, A0A3L6FNI0
      Conserved Domains (1) summary
      smart00504
      Location:297 → 360
      Ubox; Modified RING finger domain

    3. XM_008676470.3 → XP_008674692.1  U-box domain-containing protein 45

      See identical proteins and their annotated locations for XP_008674692.1

      UniProtKB/TrEMBL
      A0A096RVD6, A0A3L6FNI0
      Conserved Domains (1) summary
      smart00504
      Location:297 → 360
      Ubox; Modified RING finger domain

    4. XM_035966358.1 → XP_035822251.1  U-box domain-containing protein 45

      UniProtKB/TrEMBL
      A0A096RVD6, A0A3L6FNI0
      Conserved Domains (1) summary
      smart00504
      Location:297 → 360
      Ubox; Modified RING finger domain
    Nucleotide Protein
    Heading Accession and Version

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