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    H2BC5 H2B clustered histone 5 [ Bos taurus (domestic cattle) ]

    Gene ID: 519935, updated on 4-Oct-2024

    Summary

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    Official Symbol
    H2BC5provided by VGNC
    Official Full Name
    H2B clustered histone 5provided by VGNC
    Primary source
    VGNC:VGNC:83560
    See related
    Ensembl:ENSBTAG00000062756
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    HIST1H2BD; HIST1H2BI
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    Genomic context

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    See H2BC5 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (31787994..31795097, complement)

    Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene H4 clustered histone 4 Neighboring gene H2B clustered histone 6 Neighboring gene H1.4 linker histone, cluster member Neighboring gene transfer RNA leucine (anticodon AAG)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RAD6 gene product of Saccharomyces cerevisiae requires a putative ubiquitin protein ligase (E3) for the ubiquitination of certain proteins. Sharon G, et al. J Biol Chem, 1991 Aug 25. PMID 1651925
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Clone Names

    • MGC133641, MGC137068

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone H2B type 1-D
    Names
    histone 1, H2bi
    histone cluster 1, H2bd

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046246.2 → NP_001039711.1  histone H2B type 1-D

      See identical proteins and their annotated locations for NP_001039711.1

      Status: PROVISIONAL

      Source sequence(s)
      BC112625
      UniProtKB/TrEMBL
      A0AAA9T057, F2Z4E8, Q2KII5
      Related
      ENSBTAP00000090843.1, ENSBTAT00000125890.1
      Conserved Domains (1) summary
      smart00427
      Location:28 → 124
      H2B; Histone H2B

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      31787994..31795097 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005223762.4 → XP_005223819.1  histone H2B type 1-D isoform X1

      See identical proteins and their annotated locations for XP_005223819.1

      UniProtKB/TrEMBL
      A0AAA9T057, F2Z4E8, Q2KII5
      Related
      ENSBTAP00000042634.3, ENSBTAT00000045224.4
      Conserved Domains (1) summary
      smart00427
      Location:28 → 124
      H2B; Histone H2B
    Nucleotide Protein Strain
    Heading Accession and Version

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