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    LOC100263294 UBP1-associated protein 2A [ Vitis vinifera (wine grape) ]

    Gene ID: 100263294, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC100263294
    Gene description
    UBP1-associated protein 2A
    Locus tag
    VIT_00037490001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100263294 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 6 NC_081810.1 (15847840..15854689)
    102 previous assembly 12X (GCF_000003745.3) 6 NC_012012.3 (12801720..12803428)

    Chromosome 6 - NC_081810.1Genomic Context describing neighboring genes Neighboring gene la-related protein 1A Neighboring gene hypothetical protein Neighboring gene protein argonaute 4 Neighboring gene leucine-rich repeat protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UBP1-associated protein 2A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081810.1 Reference ASM3070453v1 Primary Assembly

      Range
      15847840..15854689
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019220745.2 → XP_019076290.1  UBP1-associated protein 2A

      UniProtKB/TrEMBL
      A0A438GB25, F6HA67

    2. XM_059737566.1 → XP_059593549.1  UBP1-associated protein 2A

      UniProtKB/TrEMBL
      F6HA67
    Nucleotide Protein
    Heading Accession and Version

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