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    LOC104881854 29 kDa ribonucleoprotein A, chloroplastic [ Vitis vinifera (wine grape) ]

    Gene ID: 104881854, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC104881854
    Gene description
    29 kDa ribonucleoprotein A, chloroplastic
    Locus tag
    VIT_00027441001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC104881854 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 15 NC_081819.1 (19725924..19727491, complement)
    102 previous assembly 12X (GCF_000003745.3) 15 NC_012021.3 (16697955..16699610, complement)

    Chromosome 15 - NC_081819.1Genomic Context describing neighboring genes Neighboring gene NDR1/HIN1-like protein 1 Neighboring gene two-component response regulator-like APRR9 Neighboring gene conserved oligomeric Golgi complex subunit 4 Neighboring gene pyruvate dehydrogenase E1 component subunit alpha-like Neighboring gene transfer RNA cysteine (anticodon GCA)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    3. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    29 kDa ribonucleoprotein A, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081819.1 Reference ASM3070453v1 Primary Assembly

      Range
      19725924..19727491 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010663194.3 → XP_010661496.2  29 kDa ribonucleoprotein A, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A438IFF0

    2. XM_010663195.3 → XP_010661497.2  29 kDa ribonucleoprotein A, chloroplastic isoform X2

      UniProtKB/TrEMBL
      A0A438IFF0
    Nucleotide Protein
    Heading Accession and Version

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