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    LOC101265601 F-box/FBD/LRR-repeat protein At1g13570 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101265601, updated on 1-Nov-2024

    Summary

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    Gene symbol
    LOC101265601
    Gene description
    F-box/FBD/LRR-repeat protein At1g13570
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101265601 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 11 NC_090810.1 (5223473..5227016)
    103 previous assembly SL3.0 (GCF_000188115.4) 11 NC_015448.3 (4614937..4618513)

    Chromosome 11 - NC_090810.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC138339666 Neighboring gene F-box/FBD/LRR-repeat protein At1g13570-like Neighboring gene uncharacterized LOC138339497 Neighboring gene F-box/FBD/LRR-repeat protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box/FBD/LRR-repeat protein At1g13570

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090810.1 Reference SLM_r2.1 Primary Assembly

      Range
      5223473..5227016
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019211201.3 → XP_019066746.1  F-box/FBD/LRR-repeat protein At1g13570 isoform X3

    2. XM_069291135.1 → XP_069147236.1  F-box/FBD/LRR-repeat protein At1g13570 isoform X1

    3. XM_019211196.3 → XP_019066741.1  F-box/FBD/LRR-repeat protein At1g13570 isoform X3

    4. XM_019211200.3 → XP_019066745.1  F-box/FBD/LRR-repeat protein At1g13570 isoform X3

    5. XM_069291138.1 → XP_069147239.1  F-box/FBD/LRR-repeat protein At1g13570 isoform X5

    6. XM_019211195.3 → XP_019066740.1  F-box/FBD/LRR-repeat protein At1g13570 isoform X2

    7. XM_019211197.3 → XP_019066742.1  F-box/FBD/LRR-repeat protein At1g13570 isoform X3

    8. XM_069291137.1 → XP_069147238.1  F-box/FBD/LRR-repeat protein At1g13570 isoform X4

    9. XM_069291139.1 → XP_069147240.1  F-box/FBD/LRR-repeat protein At1g13570 isoform X5

    10. XM_019211199.3 → XP_019066744.1  F-box/FBD/LRR-repeat protein At1g13570 isoform X3

    11. XM_069291140.1 → XP_069147241.1  F-box/FBD/LRR-repeat protein At1g13570 isoform X5

    12. XM_069291136.1 → XP_069147237.1  F-box/FBD/LRR-repeat protein At1g13570 isoform X3

    Nucleotide Protein
    Heading Accession and Version

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