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    LOC103867068 probable inactive lysine-specific demethylase JMJ19 [ Brassica rapa (field mustard) ]

    Gene ID: 103867068, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103867068
    Gene description
    probable inactive lysine-specific demethylase JMJ19
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103867068 in Genome Data Viewer
    Location:
    chromosome: A5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A05 NC_024799.2 (3470070..3473707, complement)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A5 NC_024799.1 (3279096..3282716, complement)

    Chromosome A05 - NC_024799.2Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase WAV3 Neighboring gene endoplasmic reticulum oxidoreductin-2 Neighboring gene inorganic phosphate transporter 1-4-like Neighboring gene inorganic phosphate transporter 1-4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H3K4me/H3K4me2/H3K4me3 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable inactive lysine-specific demethylase JMJ19

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024799.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      3470070..3473707 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009145098.3 → XP_009143346.1  probable inactive lysine-specific demethylase JMJ19 isoform X2

      See identical proteins and their annotated locations for XP_009143346.1

      UniProtKB/TrEMBL
      A0A397ZEB7, M4CLI1
      Conserved Domains (3) summary
      smart00545
      Location:107 → 148
      JmjN; Small domain found in the jumonji family of transcription factors
      pfam02373
      Location:328 → 441
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:548 → 600
      zf-C5HC2; C5HC2 zinc finger

    2. XM_009145099.3 → XP_009143347.1  probable inactive lysine-specific demethylase JMJ19 isoform X2

      See identical proteins and their annotated locations for XP_009143347.1

      UniProtKB/TrEMBL
      A0A397ZEB7, M4CLI1
      Conserved Domains (3) summary
      smart00545
      Location:107 → 148
      JmjN; Small domain found in the jumonji family of transcription factors
      pfam02373
      Location:328 → 441
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:548 → 600
      zf-C5HC2; C5HC2 zinc finger

    3. XM_033292256.1 → XP_033148147.1  probable inactive lysine-specific demethylase JMJ19 isoform X2

      UniProtKB/TrEMBL
      A0A397ZEB7, M4CLI1
      Conserved Domains (3) summary
      smart00545
      Location:107 → 148
      JmjN; Small domain found in the jumonji family of transcription factors
      pfam02373
      Location:328 → 441
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:548 → 600
      zf-C5HC2; C5HC2 zinc finger

    4. XM_018659343.2 → XP_018514859.1  probable inactive lysine-specific demethylase JMJ19 isoform X1

      UniProtKB/TrEMBL
      A0A8D9DBH5
    Nucleotide Protein
    Heading Accession and Version

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