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    LOC108813738 phosphoinositide phosphatase SAC2 [ Raphanus sativus (radish) ]

    Gene ID: 108813738, updated on 20-Nov-2023

    Summary

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    Gene symbol
    LOC108813738
    Gene description
    phosphoinositide phosphatase SAC2
    Locus tag
    Rs2_26470
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Raphanus sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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    Genomic context

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    See LOC108813738 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2023_06 current ASM80110v3 (GCF_000801105.2) 6 NC_079516.1 (5432493..5437233)
    100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353144.1 (4612880..4617605, complement)

    Chromosome 6 - NC_079516.1Genomic Context describing neighboring genes Neighboring gene protein LURP-one-related 11 Neighboring gene GDSL esterase/lipase At3g14220 Neighboring gene uncharacterized LOC108806181 Neighboring gene protein PATRONUS 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Construction of a high-resolution linkage map of Rfd1, a restorer-of-fertility locus for cytoplasmic male sterility conferred by DCGMS cytoplasm in radish (Raphanus sativus L.) using synteny between radish and Arabidopsis genomes. Cho Y, et al. Theor Appl Genet, 2012 Aug. PMID 22434503
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylinositol dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphoinositide phosphatase SAC2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM80110v3 Primary Assembly

    Genomic

    1. NC_079516.1 Reference ASM80110v3 Primary Assembly

      Range
      5432493..5437233
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018586385.2 → XP_018441887.1  phosphoinositide phosphatase SAC2 isoform X1

      UniProtKB/TrEMBL
      A0A6J0K1R3

    2. XM_056988859.1 → XP_056844839.1  phosphoinositide phosphatase SAC2 isoform X2

      UniProtKB/TrEMBL
      A0A9W3C023
    Nucleotide Protein
    Heading Accession and Version

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