U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC108860582 homeobox-leucine zipper protein HAT3 [ Raphanus sativus (radish) ]

    Gene ID: 108860582, updated on 9-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC108860582
    Gene description
    homeobox-leucine zipper protein HAT3
    Locus tag
    Rs2_23058
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Raphanus sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC108860582 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_06 current ASM80110v3 (GCF_000801105.2) 5 NC_079515.1 (27275381..27277367, complement)
    100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353143.1 (31092944..31094948, complement)

    Chromosome 5 - NC_079515.1Genomic Context describing neighboring genes Neighboring gene protein ARABIDILLO 2-like Neighboring gene probable U3 small nucleolar RNA-associated protein 11 Neighboring gene uncharacterized LOC130512823 Neighboring gene transcription termination factor MTEF18, mitochondrial Neighboring gene uncharacterized LOC108862896

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    homeobox-leucine zipper protein HAT3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM80110v3 Primary Assembly

    Genomic

    1. NC_079515.1 Reference ASM80110v3 Primary Assembly

      Range
      27275381..27277367 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018634444.2 → XP_018489946.1  homeobox-leucine zipper protein HAT3

      UniProtKB/TrEMBL
      A0A6J0P096
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases