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    HR-like lesion-inducing protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821896, updated on 18-Sep-2024

    Summary

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    Official Full Name
    HR-like lesion-inducing protein-like protein
    Primary source
    TAIR:AT3G23180
    Locus tag
    AT3G23180
    See related
    Araport:AT3G23180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (8276808..8278561)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene HR-like lesion-inducing protein-like protein Neighboring gene HR-like lesion-inducing protein-like protein Neighboring gene Uncharacterized protein family (UPF0497)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001338619.1
    NM_113219.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    HR-like lesion-inducing protein-like protein
    NP_001319623.1
    • HR-like lesion-inducing protein-related; CONTAINS InterPro DOMAIN/s: HR-like lesion-inducer (InterPro:IPR008637); BEST Arabidopsis thaliana protein match is: HR-like lesion-inducing protein-related (TAIR:AT3G23190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8276808..8278561
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338619.1 → NP_001319623.1  HR-like lesion-inducing protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V8Y5, A0A384LNU6, A0A5S9XF05, Q9LTD0
      Conserved Domains (1) summary
      pfam05514
      Location:18 → 201
      HR_lesion; HR-like lesion-inducing

    2. NM_113219.4 → NP_188959.3  HR-like lesion-inducing protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188959.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V8Y5, A0A384LNU6, A0A5S9XF05, Q9LTD0
      Conserved Domains (1) summary
      pfam05514
      Location:18 → 201
      HR_lesion; HR-like lesion-inducing
    Nucleotide Protein
    Heading Accession and Version

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