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    DEG11 DegP protease 11 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820902, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DEG11
    Official Full Name
    DegP protease 11
    Primary source
    TAIR:AT3G16540
    Locus tag
    AT3G16540
    See related
    Araport:AT3G16540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DegP protease 11; DegP11; degradation of periplasmic proteins 11
    Summary
    Encodes a putative DegP protease.
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    Genomic context

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    See DEG11 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (5626290..5628857, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene UDP-glucosyl transferase 88A1 Neighboring gene uncharacterized protein Neighboring gene Legume lectin family protein Neighboring gene protease Do-like protein Neighboring gene tRNA-Lys

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Friso G, et al. Plant Cell, 2004 Feb. PMID 14729914, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DegP protease 11
    NP_001319569.1
    • DegP protease 11 (DegP11); FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724), Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DEGP protease 12 (TAIR:AT3G16550.1); Has 9343 Blast hits to 9333 proteins in 2192 species: Archae - 85; Bacteria - 6893; Metazoa - 266; Fungi - 0; Plants - 274; Viruses - 2; Other Eukaryotes - 1823 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5626290..5628857 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338237.1 → NP_001319569.1  DegP protease 11 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J2Q1, Q9LK71
      UniProtKB/TrEMBL
      A0A5S9XCQ3, A0A654FHA9
      Conserved Domains (2) summary
      COG0265
      Location:99 → 408
      DegQ; Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
      pfam17815
      Location:412 → 529
      PDZ_3; PDZ domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LK71.2

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