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    SCAMP4 Secretory carrier membrane protein (SCAMP) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839464, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SCAMP4
    Official Full Name
    Secretory carrier membrane protein (SCAMP) family protein
    Primary source
    TAIR:AT1G03550
    Locus tag
    AT1G03550
    See related
    Araport:AT1G03550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtSCAMP4; F21B7.17; F21B7_17; Secretory carrier membrane protein 4
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    Genomic context

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    See SCAMP4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Sequence:
    Chromosome: 1; NC_003070.9 (885623..887956, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene nuclear assembly factor 1 Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001331416.1
    NM_001331417.1
    NM_001331418.1
    NM_001331419.1
    NM_001331420.1
    NM_001331421.1
    NM_100237.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Secretory carrier membrane protein (SCAMP) family protein
    NP_563686.1
    • Secretory carrier membrane protein (SCAMP) family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: Secretory carrier membrane protein (SCAMP) family protein (TAIR:AT2G20840.1); Has 670 Blast hits to 668 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 14; Plants - 226; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      885623..887956 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100237.1 → NP_563686.1  Secretory carrier membrane protein (SCAMP) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563686.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LR68
      UniProtKB/TrEMBL
      A0A5S9SEH2, A0A654E7W3
      Conserved Domains (2) summary
      pfam04144
      Location:92 → 264
      SCAMP; SCAMP family
      cl21462
      Location:56 → 81
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    2. NM_001331417.1 → NP_001320328.1  Secretory carrier membrane protein (SCAMP) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AMJ9

    3. NM_001331416.1 → NP_001320329.1  Secretory carrier membrane protein (SCAMP) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AMG5

    4. NM_001331418.1 → NP_001320327.1  Secretory carrier membrane protein (SCAMP) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AMJ6

    5. NM_001331419.1 → NP_001320326.1  Secretory carrier membrane protein (SCAMP) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AMF6

    6. NM_001331420.1 → NP_001320325.1  Secretory carrier membrane protein (SCAMP) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AMH4
      Conserved Domains (2) summary
      pfam04144
      Location:92 → 208
      SCAMP; SCAMP family
      cl21462
      Location:56 → 81
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    7. NM_001331421.1 → NP_001320324.1  Secretory carrier membrane protein (SCAMP) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AMG2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LR68.1

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