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    adra2a adrenoceptor alpha 2A [ Ictalurus punctatus (channel catfish) ]

    Gene ID: 108259429, updated on 20-Aug-2024

    Summary

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    Gene symbol
    adra2a
    Gene description
    adrenoceptor alpha 2A
    See related
    EnsemblRapid:ENSIPUG00020023074
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ictalurus punctatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
    Orthologs
    human zebrafish all
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    Genomic context

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    See adra2a in Genome Data Viewer
    Location:
    chromosome: 27
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_03 current Coco_2.0 (GCF_001660625.3) 27 NC_030442.2 (2929584..2930963)
    101 previous assembly IpCoco_1.2 (GCF_001660625.2) 27 NC_030442.1 (15748557..15750923, complement)

    Chromosome 27 - NC_030442.2Genomic Context describing neighboring genes Neighboring gene programmed cell death 4b Neighboring gene SHOC2 leucine rich repeat scaffold protein Neighboring gene adhesion G protein-coupled receptor G7, tandem duplicate 1 Neighboring gene Sad1 and UNC84 domain containing 2 Neighboring gene uncharacterized LOC108259462

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables adrenergic receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in adenylate cyclase-activating adrenergic receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-2A adrenergic receptor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Coco_2.0 Primary Assembly

    Genomic

    1. NC_030442.2 Reference Coco_2.0 Primary Assembly

      Range
      2929584..2930963
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017458945.3 → XP_017314434.1  alpha-2A adrenergic receptor

      UniProtKB/TrEMBL
      A0A2D0Q808
      Related
      ENSIPUP00020045055.1, ENSIPUT00020055500.1
    Nucleotide Protein
    Heading Accession and Version

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