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    hlcs holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) [ Ictalurus punctatus (channel catfish) ]

    Gene ID: 108277209, updated on 14-Mar-2024

    Summary

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    Gene symbol
    hlcs
    Gene description
    holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)
    See related
    Ensembl:ENSIPUG00000008042
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ictalurus punctatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
    Orthologs
    human zebrafish all
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    Genomic context

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    See hlcs in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2023_03 current Coco_2.0 (GCF_001660625.3) 16 NC_030431.2 (12639861..12676110)
    101 previous assembly IpCoco_1.2 (GCF_001660625.2) 16 NC_030431.1 (14062040..14098282, complement)

    Chromosome 16 - NC_030431.2Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class P Neighboring gene ripply transcriptional repressor 3 Neighboring gene SIM bHLH transcription factor 2 Neighboring gene uncharacterized LOC108277064 Neighboring gene ribosomal oxygenase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables biotin-[acetyl-CoA-carboxylase] ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein modification process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    biotin--protein ligase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Coco_2.0 Primary Assembly

    Genomic

    1. NC_030431.2 Reference Coco_2.0 Primary Assembly

      Range
      12639861..12676110
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017489726.3 → XP_017345215.1  biotin--protein ligase isoform X2

      UniProtKB/TrEMBL
      A0A2D0SSD5

    2. XM_053686865.1 → XP_053542840.1  biotin--protein ligase isoform X4

      UniProtKB/TrEMBL
      A0A9F7RCY4

    3. XM_017489725.3 → XP_017345214.1  biotin--protein ligase isoform X1

      UniProtKB/TrEMBL
      A0A2D0SR97
      Related
      ENSIPUP00000011806.1

    4. XM_017489728.3 → XP_017345217.1  biotin--protein ligase isoform X3

      UniProtKB/TrEMBL
      A0A2D0SR86
    Nucleotide Protein
    Heading Accession and Version

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