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    sgca sarcoglycan, alpha [ Kryptolebias marmoratus (mangrove rivulus) ]

    Gene ID: 108248239, updated on 10-Apr-2024

    Summary

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    Gene symbol
    sgca
    Gene description
    sarcoglycan, alpha
    See related
    EnsemblRapid:ENSKMAG00010003723
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Kryptolebias marmoratus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
    Orthologs
    zebrafish all
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    Genomic context

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    See sgca in Genome Data Viewer
    Location:
    chromosome: LG17
    Exon count:
    11
    Annotation release Status Assembly LG Location
    102 current ASM164957v2 (GCF_001649575.2) LG17 NC_051446.1 (23039231..23045077)
    101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094244.1 (1444623..1450448, complement)

    Linkage Group LG17 - NC_051446.1Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase PRDM9 Neighboring gene protein phosphatase 1, regulatory subunit 9Bb Neighboring gene collagen, type I, alpha 1b Neighboring gene inactive all-trans-retinol 13,14-reductase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of sarcoglycan complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-sarcoglycan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM164957v2 Primary Assembly

    Genomic

    1. NC_051446.1 Reference ASM164957v2 Primary Assembly

      Range
      23039231..23045077
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017436872.3 → XP_017292361.1  alpha-sarcoglycan isoform X1

      UniProtKB/TrEMBL
      A0A3Q3FB49
      Related
      ENSKMAP00010007411.1, ENSKMAT00010007792.1

    2. XM_017436892.3 → XP_017292381.1  alpha-sarcoglycan isoform X3

      UniProtKB/TrEMBL
      A0A3Q3FB49

    3. XM_017436881.3 → XP_017292370.1  alpha-sarcoglycan isoform X2

      UniProtKB/TrEMBL
      A0A3Q3FB49
      Related
      ENSKMAP00010007404.1, ENSKMAT00010007785.1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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