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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_012519.2 RefSeqGene
- Range
-
37580..157852
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001377986.2 → NP_001364915.1 serine/threonine-protein phosphatase with EF-hands 1 isoform 1
Status: REVIEWED
- Source sequence(s)
-
AL096700, Z94056
- Consensus CDS
-
CCDS14188.1
- UniProtKB/Swiss-Prot
- A6NHP4, A8K348, O14829, O15253, Q9NU21, Q9UJH0
- UniProtKB/TrEMBL
-
B0AZL8
- Conserved Domains (3) summary
-
- smart00015
Location:18 → 37
- IQ; Calmodulin-binding motif
- cd07420
Location:115 → 452
- MPP_RdgC; Drosophila melanogaster RdgC and related proteins, metallophosphatase domain
- pfam13499
Location:568 → 636
- EF-hand_7; EF-hand domain pair
-
NM_001377993.1 → NP_001364922.1 serine/threonine-protein phosphatase with EF-hands 1 isoform 1
Status: REVIEWED
- Source sequence(s)
-
AL096700, Z94056
- Consensus CDS
-
CCDS14188.1
- UniProtKB/Swiss-Prot
- A6NHP4, A8K348, O14829, O15253, Q9NU21, Q9UJH0
- UniProtKB/TrEMBL
-
B0AZL8
- Related
- ENSP00000510505.1, ENST00000692488.1
- Conserved Domains (3) summary
-
- smart00015
Location:18 → 37
- IQ; Calmodulin-binding motif
- cd07420
Location:115 → 452
- MPP_RdgC; Drosophila melanogaster RdgC and related proteins, metallophosphatase domain
- pfam13499
Location:568 → 636
- EF-hand_7; EF-hand domain pair
-
NM_001377994.1 → NP_001364923.1 serine/threonine-protein phosphatase with EF-hands 1 isoform 2
Status: REVIEWED
- Source sequence(s)
-
AL096700, Z94056
- UniProtKB/TrEMBL
- B7Z353, B7Z6R7
- Conserved Domains (2) summary
-
- cd07420
Location:50 → 387
- MPP_RdgC; Drosophila melanogaster RdgC and related proteins, metallophosphatase domain
- pfam13499
Location:503 → 571
- EF-hand_7; EF-hand domain pair
-
NM_001377995.1 → NP_001364924.1 serine/threonine-protein phosphatase with EF-hands 1 isoform 4
Status: REVIEWED
- Source sequence(s)
-
AL096700, Z94056
- Consensus CDS
-
CCDS94563.1
- UniProtKB/TrEMBL
- A0A8I5KXD3, B7Z353
- Conserved Domains (3) summary
-
- PTZ00183
Location:395 → 543
- PTZ00183; centrin; Provisional
- cd07420
Location:25 → 362
- MPP_RdgC; Drosophila melanogaster RdgC and related proteins, metallophosphatase domain
- pfam13499
Location:478 → 546
- EF-hand_7; EF-hand domain pair
-
NM_001377996.1 → NP_001364925.1 serine/threonine-protein phosphatase with EF-hands 1 isoform 1
Status: REVIEWED
- Source sequence(s)
-
AL096700, Z94056
- Consensus CDS
-
CCDS14188.1
- UniProtKB/Swiss-Prot
- A6NHP4, A8K348, O14829, O15253, Q9NU21, Q9UJH0
- UniProtKB/TrEMBL
-
B0AZL8
- Related
- ENSP00000419273.2, ENST00000470157.2
- Conserved Domains (3) summary
-
- smart00015
Location:18 → 37
- IQ; Calmodulin-binding motif
- cd07420
Location:115 → 452
- MPP_RdgC; Drosophila melanogaster RdgC and related proteins, metallophosphatase domain
- pfam13499
Location:568 → 636
- EF-hand_7; EF-hand domain pair
-
NM_001378381.1 → NP_001365310.1 serine/threonine-protein phosphatase with EF-hands 1 isoform 1
Status: REVIEWED
- Source sequence(s)
-
AL096700, Z94056
- Consensus CDS
-
CCDS14188.1
- UniProtKB/Swiss-Prot
- A6NHP4, A8K348, O14829, O15253, Q9NU21, Q9UJH0
- UniProtKB/TrEMBL
-
B0AZL8
- Conserved Domains (3) summary
-
- smart00015
Location:18 → 37
- IQ; Calmodulin-binding motif
- cd07420
Location:115 → 452
- MPP_RdgC; Drosophila melanogaster RdgC and related proteins, metallophosphatase domain
- pfam13499
Location:568 → 636
- EF-hand_7; EF-hand domain pair
-
NM_001378382.1 → NP_001365311.1 serine/threonine-protein phosphatase with EF-hands 1 isoform 5
Status: REVIEWED
- Source sequence(s)
-
AL096700, Z94056
- UniProtKB/TrEMBL
-
B0AZL8
- Conserved Domains (4) summary
-
- PTZ00183
Location:393 → 541
- PTZ00183; centrin; Provisional
- smart00015
Location:18 → 37
- IQ; Calmodulin-binding motif
- pfam13499
Location:476 → 544
- EF-hand_7; EF-hand domain pair
- cl13995
Location:79 → 360
- MPP_superfamily; metallophosphatase superfamily, metallophosphatase domain
-
NM_001389620.1 → NP_001376549.1 serine/threonine-protein phosphatase with EF-hands 1 isoform 1
Status: REVIEWED
- Source sequence(s)
-
AL096700, Z94056
- Consensus CDS
-
CCDS14188.1
- UniProtKB/Swiss-Prot
- A6NHP4, A8K348, O14829, O15253, Q9NU21, Q9UJH0
- UniProtKB/TrEMBL
-
B0AZL8
- Conserved Domains (3) summary
-
- smart00015
Location:18 → 37
- IQ; Calmodulin-binding motif
- cd07420
Location:115 → 452
- MPP_RdgC; Drosophila melanogaster RdgC and related proteins, metallophosphatase domain
- pfam13499
Location:568 → 636
- EF-hand_7; EF-hand domain pair
-
NM_001389621.1 → NP_001376550.1 serine/threonine-protein phosphatase with EF-hands 1 isoform 1
Status: REVIEWED
- Source sequence(s)
-
AL096700, Z94056
- Consensus CDS
-
CCDS14188.1
- UniProtKB/Swiss-Prot
- A6NHP4, A8K348, O14829, O15253, Q9NU21, Q9UJH0
- UniProtKB/TrEMBL
-
B0AZL8
- Related
- ENSP00000509623.1, ENST00000471570.6
- Conserved Domains (3) summary
-
- smart00015
Location:18 → 37
- IQ; Calmodulin-binding motif
- cd07420
Location:115 → 452
- MPP_RdgC; Drosophila melanogaster RdgC and related proteins, metallophosphatase domain
- pfam13499
Location:568 → 636
- EF-hand_7; EF-hand domain pair
-
NM_001389623.1 → NP_001376552.1 serine/threonine-protein phosphatase with EF-hands 1 isoform 3
Status: REVIEWED
- Source sequence(s)
-
AL096700, Z94056
- Consensus CDS
-
CCDS43920.1
- UniProtKB/TrEMBL
-
B0AZL8
- Related
- ENSP00000341892.5, ENST00000349874.10
- Conserved Domains (3) summary
-
- smart00015
Location:18 → 37
- IQ; Calmodulin-binding motif
- pfam13499
Location:506 → 574
- EF-hand_7; EF-hand domain pair
- cl13995
Location:115 → 390
- MPP_superfamily; metallophosphatase superfamily, metallophosphatase domain
-
NM_001389624.1 → NP_001376553.1 serine/threonine-protein phosphatase with EF-hands 1 isoform 4
Status: REVIEWED
- Source sequence(s)
-
AL096700, Z94056
- Consensus CDS
-
CCDS94563.1
- UniProtKB/TrEMBL
- A0A8I5KXD3, B7Z353
- Related
- ENSP00000508824.1, ENST00000496616.6
- Conserved Domains (3) summary
-
- PTZ00183
Location:395 → 543
- PTZ00183; centrin; Provisional
- cd07420
Location:25 → 362
- MPP_RdgC; Drosophila melanogaster RdgC and related proteins, metallophosphatase domain
- pfam13499
Location:478 → 546
- EF-hand_7; EF-hand domain pair
-
NM_006240.4 → NP_006231.2 serine/threonine-protein phosphatase with EF-hands 1 isoform 1
See identical proteins and their annotated locations for NP_006231.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the predominant isoform (1).
- Source sequence(s)
-
AL096700, Z94056
- Consensus CDS
-
CCDS14188.1
- UniProtKB/Swiss-Prot
- A6NHP4, A8K348, O14829, O15253, Q9NU21, Q9UJH0
- UniProtKB/TrEMBL
-
B0AZL8
- Related
- ENSP00000354871.3, ENST00000361511.9
- Conserved Domains (3) summary
-
- smart00015
Location:18 → 37
- IQ; Calmodulin-binding motif
- cd07420
Location:115 → 452
- MPP_RdgC; Drosophila melanogaster RdgC and related proteins, metallophosphatase domain
- pfam13499
Location:568 → 636
- EF-hand_7; EF-hand domain pair
-
NM_152224.2 → NP_689410.1 serine/threonine-protein phosphatase with EF-hands 1 isoform 1b
See identical proteins and their annotated locations for NP_689410.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1b) uses an alternate in-frame splice site compared to variant 1, resulting in an isoform (1b) that lacks an internal segment compared to isoform 1. Isoform 1b contains a catalytic domain and two EF-hand motifs. Its functional significance is unknown.
- Source sequence(s)
-
AL096700, Z94056
- UniProtKB/TrEMBL
-
B0AZL8
- Conserved Domains (5) summary
-
- smart00015
Location:18 → 37
- IQ; Calmodulin-binding motif
- smart00156
Location:134 → 427
- PP2Ac; Protein phosphatase 2A homologues, catalytic domain
- cd00051
Location:542 → 607
- EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
- cd07420
Location:115 → 424
- MPP_RdgC; Drosophila melanogaster RdgC and related proteins, metallophosphatase domain
- pfam13499
Location:546 → 607
- EF-hand_7; EF-hand domain pair
-
NM_152226.2 → NP_689412.1 serine/threonine-protein phosphatase with EF-hands 1 isoform 3
See identical proteins and their annotated locations for NP_689412.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an in-frame exon in the coding region compared to variant 1, resulting in an isoform (3) that is missing an internal segment compared to isoform 1. Isoform 3 contains a catalytic domain and two EF-hand motifs. Its functional significance is unknown.
- Source sequence(s)
-
AL096700, Z94056
- Consensus CDS
-
CCDS43920.1
- UniProtKB/TrEMBL
-
B0AZL8
- Conserved Domains (3) summary
-
- smart00015
Location:18 → 37
- IQ; Calmodulin-binding motif
- pfam13499
Location:506 → 574
- EF-hand_7; EF-hand domain pair
- cl13995
Location:115 → 390
- MPP_superfamily; metallophosphatase superfamily, metallophosphatase domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000023.11 Reference GRCh38.p14 Primary Assembly
- Range
-
18675067..18827917
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047442194.1 → XP_047298150.1 serine/threonine-protein phosphatase with EF-hands 1 isoform X1
- UniProtKB/Swiss-Prot
- A6NHP4, A8K348, O14829, O15253, Q9NU21, Q9UJH0
-
XM_047442195.1 → XP_047298151.1 serine/threonine-protein phosphatase with EF-hands 1 isoform X1
- UniProtKB/Swiss-Prot
- A6NHP4, A8K348, O14829, O15253, Q9NU21, Q9UJH0
-
XM_047442193.1 → XP_047298149.1 serine/threonine-protein phosphatase with EF-hands 1 isoform X1
- UniProtKB/Swiss-Prot
- A6NHP4, A8K348, O14829, O15253, Q9NU21, Q9UJH0
- Related
- ENSP00000509616.1, ENST00000689646.1
-
XM_017029612.2 → XP_016885101.1 serine/threonine-protein phosphatase with EF-hands 1 isoform X2
- UniProtKB/TrEMBL
- A0A8I5KXD3, B7Z353
- Conserved Domains (3) summary
-
- PTZ00183
Location:395 → 543
- PTZ00183; centrin; Provisional
- cd07420
Location:25 → 362
- MPP_RdgC; Drosophila melanogaster RdgC and related proteins, metallophosphatase domain
- pfam13499
Location:478 → 546
- EF-hand_7; EF-hand domain pair
-
XM_047442192.1 → XP_047298148.1 serine/threonine-protein phosphatase with EF-hands 1 isoform X1
- UniProtKB/Swiss-Prot
- A6NHP4, A8K348, O14829, O15253, Q9NU21, Q9UJH0
Alternate T2T-CHM13v2.0
Genomic
-
NC_060947.1 Alternate T2T-CHM13v2.0
- Range
-
18257672..18410535
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054327288.1 → XP_054183263.1 serine/threonine-protein phosphatase with EF-hands 1 isoform X1
- UniProtKB/Swiss-Prot
- A6NHP4, A8K348, O14829, O15253, Q9NU21, Q9UJH0
-
XM_054327289.1 → XP_054183264.1 serine/threonine-protein phosphatase with EF-hands 1 isoform X1
- UniProtKB/Swiss-Prot
- A6NHP4, A8K348, O14829, O15253, Q9NU21, Q9UJH0
-
XM_054327287.1 → XP_054183262.1 serine/threonine-protein phosphatase with EF-hands 1 isoform X1
- UniProtKB/Swiss-Prot
- A6NHP4, A8K348, O14829, O15253, Q9NU21, Q9UJH0
-
XM_054327290.1 → XP_054183265.1 serine/threonine-protein phosphatase with EF-hands 1 isoform X2
- UniProtKB/TrEMBL
-
A0A8I5KXD3
-
XM_054327286.1 → XP_054183261.1 serine/threonine-protein phosphatase with EF-hands 1 isoform X1
- UniProtKB/Swiss-Prot
- A6NHP4, A8K348, O14829, O15253, Q9NU21, Q9UJH0
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_152223.1: Suppressed sequence
- Description
- NM_152223.1: This RefSeq was permanently suppressed because it contains the wrong CDS. Annotation of the correct CDS causes this transcript to be a candidate for nonsense-mediated mRNA decay (NMD).
-
NM_152225.1: Suppressed sequence
- Description
- NM_152225.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.