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    LOC107879875 zinc-finger homeodomain protein 3 [ Capsicum annuum ]

    Gene ID: 107879875, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC107879875
    Gene description
    zinc-finger homeodomain protein 3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Capsicum annuum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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    Genomic context

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    See LOC107879875 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    101 current UCD10Xv1.1 (GCF_002878395.1) Unplaced Scaffold NW_025839065.1 (171791..173177)
    100 previous assembly Pepper Zunla 1 Ref_v1.0 (GCF_000710875.1) 8 NC_029984.1 (137789911..137791014, complement)

    NW_025839065.1Genomic Context describing neighboring genes Neighboring gene COBRA-like protein 6 Neighboring gene ubiquitin-like domain-containing CTD phosphatase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of developmental process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc-finger homeodomain protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Capsicum annuum Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCD10Xv1.1 Primary Assembly

    Genomic

    1. NW_025839065.1 Reference UCD10Xv1.1 Primary Assembly

      Range
      171791..173177
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016726806.2 → XP_016582292.1  zinc-finger homeodomain protein 3

      UniProtKB/TrEMBL
      A0A1U8HFU6
      Conserved Domains (2) summary
      TIGR01565
      Location:152 → 204
      homeo_ZF_HD; homeobox domain, ZF-HD class
      pfam04770
      Location:9 → 60
      ZF-HD_dimer; ZF-HD protein dimerization region
    Nucleotide Protein
    Heading Accession and Version

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