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    LOC107819090 respiratory burst oxidase homolog protein E-like [ Nicotiana tabacum (common tobacco) ]

    Gene ID: 107819090, updated on 28-Dec-2023

    Summary

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    Gene symbol
    LOC107819090
    Gene description
    respiratory burst oxidase homolog protein E-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nicotiana tabacum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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    Genomic context

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    See LOC107819090 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015821131.1 (60804..70138, complement)

    NW_015821131.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107819091

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_015821131.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD(P)H oxidase H2O2-forming activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    respiratory burst oxidase homolog protein E-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ntab-TN90 Primary Assembly

    Genomic

    1. NW_015821131.1 Reference Ntab-TN90 Primary Assembly

      Range
      60804..70138 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016645171.1 → XP_016500657.1  respiratory burst oxidase homolog protein E-like isoform X1

      UniProtKB/TrEMBL
      A0A1S4CHH5
      Conserved Domains (7) summary
      cd00051
      Location:230 → 277
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam01794
      Location:418 → 564
      Ferric_reduct; Ferric reductase like transmembrane component
      pfam08022
      Location:607 → 723
      FAD_binding_8; FAD-binding domain
      pfam08030
      Location:729 → 910
      NAD_binding_6; Ferric reductase NAD binding domain
      pfam08414
      Location:152 → 249
      NADPH_Ox; Respiratory burst NADPH oxidase
      pfam13499
      Location:256 → 320
      EF-hand_7; EF-hand domain pair
      cl08302
      Location:256 → 313
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    2. XM_016645172.1 → XP_016500658.1  respiratory burst oxidase homolog protein E-like isoform X2

      UniProtKB/TrEMBL
      A0A1S4CHK9
    Nucleotide Protein
    Heading Accession and Version

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