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    LOC107782191 nuclear transcription factor Y subunit B-5-like [ Nicotiana tabacum (common tobacco) ]

    Gene ID: 107782191, updated on 28-Dec-2023

    Summary

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    Gene symbol
    LOC107782191
    Gene description
    nuclear transcription factor Y subunit B-5-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nicotiana tabacum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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    Genomic context

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    See LOC107782191 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015908402.1 (7..2576, complement)

    NW_015908402.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_015908402.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear transcription factor Y subunit B-5-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ntab-TN90 Primary Assembly

    Genomic

    1. NW_015908402.1 Reference Ntab-TN90 Primary Assembly

      Range
      7..2576 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016603044.1 → XP_016458530.1  nuclear transcription factor Y subunit B-5-like

      UniProtKB/TrEMBL
      A0A1S3Z287
      Conserved Domains (1) summary
      pfam00808
      Location:17 → 80
      CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone

    RNA

    1. XR_001647169.1 RNA Sequence

    2. XR_001647170.1 RNA Sequence

    3. XR_001647171.1 RNA Sequence

    4. XR_001647172.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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