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    LOC107621723 zinc finger CCCH domain-containing protein 39 [ Arachis ipaensis ]

    Gene ID: 107621723, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC107621723
    Gene description
    zinc finger CCCH domain-containing protein 39
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arachis ipaensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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    Genomic context

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    See LOC107621723 in Genome Data Viewer
    Location:
    chromosome: B10
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    101 current Araip1.1 (GCF_000816755.2) B10 NC_029794.2 (8660596..8663106)
    100 previous assembly Araip1.0 (GCF_000816755.1) B10 NC_029794.1 (8660635..8663119)

    Chromosome B10 - NC_029794.2Genomic Context describing neighboring genes Neighboring gene uncharacterized RNA-binding protein C17H9.04c Neighboring gene ISWI chromatin-remodeling complex ATPase CHR17-like Neighboring gene nudix hydrolase 19, chloroplastic Neighboring gene probable amino-acid racemase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger CCCH domain-containing protein 39

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Araip1.1

    Genomic

    1. NC_029794.2 Reference Araip1.1

      Range
      8660596..8663106
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016323738.2 → XP_016179224.1  zinc finger CCCH domain-containing protein 39

      Conserved Domains (1) summary
      COG5063
      Location:55 → 278
      CTH1; CCCH-type Zn-finger protein [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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