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    LOC4349547 probable calcium-binding protein CML25/26 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349547, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4349547
    Gene description
    probable calcium-binding protein CML25/26
    Locus tag
    OSNPB_110105000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4349547 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (286735..287440, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (245042..246074, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene protein trichome birefringence-like 28 Neighboring gene clathrin heavy chain 1-like Neighboring gene ammonium transporter 3 member 1-like Neighboring gene uncharacterized LOC4349548

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable calcium-binding protein CML25/26
    Names
    Os11g0105000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      286735..287440 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761124.3 → XP_015616610.1  probable calcium-binding protein CML25/26

      UniProtKB/Swiss-Prot
      A0A0N7KTF6, Q2QYW1
      UniProtKB/TrEMBL
      A2ZH78, A3CE53
      Conserved Domains (1) summary
      PTZ00183
      Location:13 → 145
      PTZ00183; centrin; Provisional
    Nucleotide Protein
    Heading Accession and Version

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