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    LOC4344619 cysteine-rich repeat secretory protein 55 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344619, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344619
    Gene description
    cysteine-rich repeat secretory protein 55
    Locus tag
    OSNPB_080136800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1613_G04.16
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (2078708..2079968)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (2066321..2067693)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene cysteine-rich repeat secretory protein 55 Neighboring gene cysteine-rich repeat secretory protein 55 Neighboring gene polycomb group protein FIE1-like Neighboring gene actin-related protein 4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    cysteine-rich repeat secretory protein 55
    Names
    33kDa secretory protein
    Os08g0136800
    putative 33 kDa secretory protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      2078708..2079968
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794396.2 → XP_015649882.1  cysteine-rich repeat secretory protein 55

      UniProtKB/TrEMBL
      A2YR08, A3BPF7, Q0J849, Q6ZJX3
      Conserved Domains (1) summary
      pfam01657
      Location:55 → 133
      Stress-antifung; Salt stress response/antifungal
    Nucleotide Protein
    Heading Accession and Version

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