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    LOC4342342 peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342342, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342342
    Gene description
    peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic
    Locus tag
    OSNPB_070133700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0507H12.7; OJ1118_D07.22
    Expression
    Broad expression in leaves before flowering (RPKM 15.5), flowers (RPKM 7.1) and 5 other tissues See more
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    Genomic context

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    See LOC4342342 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (1788519..1791548)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (1777412..1780453)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357516 Neighboring gene uncharacterized LOC4342341 Neighboring gene uncharacterized LOC136357161 Neighboring gene amino acid permease 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in thylakoid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic
    Names
    Os07g0133700
    immunophilin/FKBP-type peptidyl-prolyl cis-trans isomerase-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      1788519..1791548
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789358.3 → XP_015644844.1  peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic

      UniProtKB/TrEMBL
      A0A8J8XII2, A2YHW8, B7F8B9, B9FVD1, Q6ZLL2
      Conserved Domains (1) summary
      COG0545
      Location:64 → 233
      FkpA; FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

    2. XM_015789356.3 → XP_015644842.1  peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic

      UniProtKB/TrEMBL
      A0A8J8XII2, A2YHW8, B7F8B9, B9FVD1, Q6ZLL2
      Conserved Domains (1) summary
      COG0545
      Location:64 → 233
      FkpA; FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

    3. XM_015789357.3 → XP_015644843.1  peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic

      UniProtKB/TrEMBL
      A0A8J8XII2, A2YHW8, B7F8B9, B9FVD1, Q6ZLL2
      Conserved Domains (1) summary
      COG0545
      Location:64 → 233
      FkpA; FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version

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