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    LOC4340602 ankyrin repeat domain-containing protein EMB506, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340602, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340602
    Gene description
    ankyrin repeat domain-containing protein EMB506, chloroplastic
    Locus tag
    OSNPB_060237000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4340602 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (7289012..7291305, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (7120856..7123194, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene cyclin-D1-1 Neighboring gene tRNA (guanine-N(7)-)-methyltransferase-like Neighboring gene uncharacterized LOC4340603 Neighboring gene DNA polymerase lambda-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chloroplast targeting sequence binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein targeting to chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ankyrin repeat domain-containing protein EMB506, chloroplastic
    Names
    OSJNBa0068B06.3
    ankyrin repeat protein chloroplast precursor-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      7289012..7291305 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788328.3 → XP_015643814.1  ankyrin repeat domain-containing protein EMB506, chloroplastic

      UniProtKB/TrEMBL
      A2YB35, A3BA22
      Conserved Domains (3) summary
      sd00045
      Location:193 → 224
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:162 → 214
      Ank_4; Ankyrin repeats (many copies)
      pfam12796
      Location:198 → 289
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version

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