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    LOC4341309 BEL1-like homeodomain protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341309, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4341309
    Gene description
    BEL1-like homeodomain protein 1
    Locus tag
    OSNPB_060562300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0656E03.4
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    Genomic context

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    See LOC4341309 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (22422543..22426654, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (21563919..21567990, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112939420 Neighboring gene ABC transporter C family member 8-like Neighboring gene abscisic acid receptor PYL9-like Neighboring gene T-complex protein 1 subunit epsilon Neighboring gene protein SHORT ROOT IN SALT MEDIUM 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BEL1-like homeodomain protein 1
    Names
    Os06g0562300
    P0456F09.31
    putative H1 gene protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      22422543..22426654 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786268.3 → XP_015641754.1  BEL1-like homeodomain protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A0N7KMA3, Q0DBI4, Q5Z8R9
      Conserved Domains (2) summary
      pfam05920
      Location:467 → 506
      Homeobox_KN; Homeobox KN domain
      cl02677
      Location:274 → 368
      POX; Associated with HOX

    2. XM_026026629.2 → XP_025882414.1  BEL1-like homeodomain protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A0N7KMA3, Q0DBI4, Q5Z8R9
      Conserved Domains (2) summary
      pfam05920
      Location:467 → 506
      Homeobox_KN; Homeobox KN domain
      cl02677
      Location:274 → 368
      POX; Associated with HOX

    3. XM_015786267.3 → XP_015641753.1  BEL1-like homeodomain protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A0N7KMA3, Q0DBI4, Q5Z8R9
      Conserved Domains (2) summary
      pfam05920
      Location:467 → 506
      Homeobox_KN; Homeobox KN domain
      cl02677
      Location:274 → 368
      POX; Associated with HOX

    4. XM_026026630.2 → XP_025882415.1  BEL1-like homeodomain protein 1 isoform X2

      UniProtKB/TrEMBL
      Q5Z8R9
      Conserved Domains (1) summary
      pfam05920
      Location:463 → 502
      Homeobox_KN; Homeobox KN domain

    5. XM_066311831.1 → XP_066167928.1  BEL1-like homeodomain protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A0N7KMA3, Q0DBI4
    Nucleotide Protein
    Heading Accession and Version

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