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    LOC4338963 O-fucosyltransferase 19 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338963, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338963
    Gene description
    O-fucosyltransferase 19
    Locus tag
    OSNPB_050451900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 7.6), flower buds (RPKM 7.0) and 6 other tissues See more
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    Genomic context

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    See LOC4338963 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (22297500..22302183)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (22183874..22188753)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112939016 Neighboring gene probable anion transporter 2, chloroplastic Neighboring gene uncharacterized LOC4338962 Neighboring gene uncharacterized LOC107280830 Neighboring gene uncharacterized LOC9268261 Neighboring gene uncharacterized LOC136351123 Neighboring gene small nucleolar RNA snoR26

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    O-fucosyltransferase 19
    Names
    Os05g0451900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      22297500..22302183
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781945.3 → XP_015637431.1  O-fucosyltransferase 19

      Conserved Domains (1) summary
      cd11299
      Location:225 → 545
      O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily

    2. XM_026025792.2 → XP_025881577.1  O-fucosyltransferase 19

      Conserved Domains (1) summary
      cd11299
      Location:225 → 545
      O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
    Nucleotide Protein
    Heading Accession and Version

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