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    LOC122774903 apolipoprotein C-I-like [ Solea senegalensis (Senegalese sole) ]

    Gene ID: 122774903, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC122774903
    Gene description
    apolipoprotein C-I-like
    Locus tag
    JOB18_016619
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solea senegalensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
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    Genomic context

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    See LOC122774903 in Genome Data Viewer
    Location:
    chromosome: LG9
    Exon count:
    4
    Annotation release Status Assembly LG Location
    100 current IFAPA_SoseM_1 (GCF_019176455.1) LG9 NC_058029.1 (24549837..24550957, complement)

    Linkage Group LG9 - NC_058029.1Genomic Context describing neighboring genes Neighboring gene apolipoprotein A-II Neighboring gene apolipoprotein C-IV Neighboring gene apolipoprotein Eb-like Neighboring gene apolipoprotein Eb-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058029.1 Chromosome LG9 Reference IFAPA_SoseM_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. New insights into molecular pathways associated with flatfish ovarian development and atresia revealed by transcriptional analysis. Tingaud-Sequeira A, et al. BMC Genomics, 2009 Sep 15. PMID 19754951, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables fatty acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phospholipase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipoprotein metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of cholesterol transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of lipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of lipoprotein lipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of very-low-density lipoprotein particle clearance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in triglyceride metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in very-low-density lipoprotein particle clearance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of high-density lipoprotein particle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of very-low-density lipoprotein particle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    apolipoprotein C-I-like
    Names
    apolipoprotein C-I

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Solea senegalensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IFAPA_SoseM_1 Primary Assembly

    Genomic

    1. NC_058029.1 Reference IFAPA_SoseM_1 Primary Assembly

      Range
      24549837..24550957 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044034498.1 → XP_043890433.1  apolipoprotein C-I-like

      UniProtKB/TrEMBL
      C8XQX5
      Conserved Domains (1) summary
      pfam04691
      Location:24 → 78
      ApoC-I; Apolipoprotein C-I (ApoC-1)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases