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    LOC101246756 V-type proton ATPase subunit D [ Solanum lycopersicum (tomato) ]

    Gene ID: 101246756, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC101246756
    Gene description
    V-type proton ATPase subunit D
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current SL3.0 (GCF_000188115.4) 1 NC_015438.3 (80939348..80944284, complement)
    102 previous assembly SL2.50 (GCF_000188115.3) 1 NC_015438.2 (81054705..81059637, complement)

    Chromosome 1 - NC_015438.3Genomic Context describing neighboring genes Neighboring gene major facilitator superfamily domain-containing protein 12-like Neighboring gene protein YLS3 Neighboring gene AAA-ATPase At4g30250-like Neighboring gene uncharacterized LOC101248133

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: a test case in the euasterid plant clade. Wu F, et al. Genetics, 2006 Nov. PMID 16951058, Free PMC Article
    2. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables proton-transporting ATPase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of proton-transporting V-type ATPase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in vacuolar membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    V-type proton ATPase subunit D
    NP_001316575.1
    XP_025886126.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001329646.1 → NP_001316575.1  V-type proton ATPase subunit D

      Status: VALIDATED

      Source sequence(s)
      AEKE03003137, AK320263, DB727658
      UniProtKB/TrEMBL
      A0A3Q7F0I2
      Conserved Domains (1) summary
      pfam01813
      Location:16 → 209
      ATP-synt_D; ATP synthase subunit D

    RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SL3.0 Primary Assembly

    Genomic

    1. NC_015438.3 Reference SL3.0 Primary Assembly

      Range
      80939348..80944284 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026030341.1 → XP_025886126.1  V-type proton ATPase subunit D isoform X1

      UniProtKB/TrEMBL
      A0A3Q7F0I2
      Conserved Domains (1) summary
      pfam01813
      Location:16 → 209
      ATP-synt_D; ATP synthase subunit D
    Nucleotide Protein
    Heading Accession and Version

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